| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,453,360 – 15,453,420 |
| Length | 60 |
| Max. P | 0.979343 |
| Location | 15,453,360 – 15,453,420 |
|---|---|
| Length | 60 |
| Sequences | 5 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 94.04 |
| Shannon entropy | 0.10412 |
| G+C content | 0.36213 |
| Mean single sequence MFE | -12.32 |
| Consensus MFE | -11.68 |
| Energy contribution | -12.08 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.02 |
| SVM RNA-class probability | 0.979343 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15453360 60 + 21146708 ACUCGAGAGAAUAAUGUUCUCGACUAAUUGGUUUGCAUGACCAAAAUUCAUCCA-ACACAA ..(((((((.......)))))))....((((((.....))))))..........-...... ( -12.40, z-score = -2.05, R) >droSim1.chr2R 14154635 60 + 19596830 AUUCGAGAGAAUAAUGUUCUCGACUAAUUGGUUUGCAUGACCAAAACCCAUACA-ACACAA ..(((((((.......)))))))....((((((.....))))))..........-...... ( -12.50, z-score = -2.58, R) >droSec1.super_1 12972723 60 + 14215200 AUUCGAGAGAAUAAUGUUCUCGACUAAUUGGUUUGCAUGACCAAAAUCCAUACA-ACACAA ..(((((((.......)))))))....((((((.....))))))..........-...... ( -12.50, z-score = -2.34, R) >droYak2.chr2R 7418400 61 - 21139217 ACUCGAGAGAAUAAUGAUCUCGACUAAUUGGUUUGCAUGACCAAAAUCUAUUCACACACAA ..((((((.........))))))....((((((.....))))))................. ( -12.10, z-score = -2.21, R) >droEre2.scaffold_4845 9652874 60 + 22589142 ACUCGAGAGAAUAAUGAUCUCGACUAAUUGGUUUGCAUGACCAAAAUCCAUUCA-ACACAA ..((((((.........))))))....((((((.....))))))..........-...... ( -12.10, z-score = -2.12, R) >consensus ACUCGAGAGAAUAAUGUUCUCGACUAAUUGGUUUGCAUGACCAAAAUCCAUACA_ACACAA ..(((((((.......)))))))....((((((.....))))))................. (-11.68 = -12.08 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:08 2011