Locus 4743

Sequence ID dm3.chr2R
Location 15,445,719 – 15,445,812
Length 93
Max. P 0.590098
window6508

overview

Window 8

Location 15,445,719 – 15,445,812
Length 93
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 73.46
Shannon entropy 0.42181
G+C content 0.38991
Mean single sequence MFE -20.84
Consensus MFE -11.68
Energy contribution -12.12
Covariance contribution 0.44
Combinations/Pair 1.07
Mean z-score -1.51
Structure conservation index 0.56
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.20
SVM RNA-class probability 0.590098
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 15445719 93 - 21146708
-----------------------AUCUGAGAUACUACUAUUUUCCAAACCAAUUGUAAAAUGUCUCGUGCAACACUGCGUAUGAGUAAUAACUCAGAGUCCACUCCCAUGGAAAUA
-----------------------.((((((.......((((((.(((.....))).)))))).(((((((........)))))))......)))))).((((......)))).... ( -20.70, z-score =  -2.77, R)
>droEre2.scaffold_4845 9645032 114 - 22589142
AUCUGGGAUUUGUAUAUGUGCAUAAUAG-AGGCCAACCCUCUUCCGAAACAAUCGUGUAG-AUCUCGUGCAACACUGCGUAUGAGUAAUAAUUCAGAGGGCACUCCCAUAGAAAUA
...(((((........(((.......((-(((.....)))))......)))...((((..-.((((..(((....)))...(((((....))))))))))))))))))........ ( -25.42, z-score =  -0.12, R)
>droYak2.chr2R 7410635 115 + 21139217
GUCUGAGAUUUUUAUAUGUGCAUAAUAGAAGACCAACCCUCCUCCAAAACAAUUGUAGAU-AUCUCGUGCAACACUGCGUAUGAGUAAUAAUUCAGAGUCCACGCCCAUGGAAAUA
.((((((......((((.((((...............................)))).))-))(((((((........)))))))......)))))).((((......)))).... ( -19.18, z-score =  -0.31, R)
>droSec1.super_1 12965135 92 - 14215200
-----------------------AUCUGAGAUACUACUAUUUUCCAAACCAAGUGUAAAA-GUCUCGUGCAACAUUGCGUAUGAGUAAUAACUCAGAGUCCACUCCCAUGGAAAUA
-----------------------.(((((((((((................)))))....-..(((((((........)))))))......)))))).((((......)))).... ( -19.89, z-score =  -2.22, R)
>droSim1.chr2R 14147016 92 - 19596830
-----------------------AUCUGAGAUACUACUAUUUUCCAAACCAAUUGUAAAA-GUCUCGUGCAACACUGCGUAUGAGUAAUAACUCAGAGUCCACUCCCAUGGAAAUA
-----------------------.((((((.........((((.(((.....))).))))-..(((((((........)))))))......)))))).((((......)))).... ( -19.00, z-score =  -2.13, R)
>consensus
_______________________AUCUGAGAUACUACUAUUUUCCAAACCAAUUGUAAAA_GUCUCGUGCAACACUGCGUAUGAGUAAUAACUCAGAGUCCACUCCCAUGGAAAUA
.........................................(((((.................(((((((........)))))))..........(((....)))...)))))... (-11.68 = -12.12 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:05 2011