Locus 4742

Sequence ID dm3.chr2R
Location 15,442,165 – 15,442,231
Length 66
Max. P 0.779419
window6507

overview

Window 7

Location 15,442,165 – 15,442,231
Length 66
Sequences 5
Columns 68
Reading direction forward
Mean pairwise identity 92.51
Shannon entropy 0.12777
G+C content 0.45490
Mean single sequence MFE -16.10
Consensus MFE -15.86
Energy contribution -15.66
Covariance contribution -0.20
Combinations/Pair 1.12
Mean z-score -1.02
Structure conservation index 0.99
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.66
SVM RNA-class probability 0.779419
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 15442165 66 + 21146708
GACCGUUU--GCUGAUGGUACAUCUAAUGUUUGCUAAUCCCGCACUGCAUUUAUGCAGAUGCCGUGUU
.((((((.--...))))))......................((((.((((((....)))))).)))). ( -14.90, z-score =  -0.67, R)
>droEre2.scaffold_4845 9641563 66 + 22589142
GACCGUUU--GCUGACGGCACUUGUAAUGUUUACUAAUCUCGCACUGCAUUUAUGCAGAUGCCGUGUU
..(((((.--...)))))(((..(((.....))).......((((((((....))))).))).))).. ( -16.10, z-score =  -0.95, R)
>droYak2.chr2R 7407009 68 - 21139217
GACCGUUUUGGCUGACGGUACAUCUAAUGUUCACUAAUCUCGCACUGCAUUUAUGCAGAUGCUGUGUU
.((((((......))))))......................((((((((....))))).)))...... ( -17.20, z-score =  -1.30, R)
>droSec1.super_1 12961598 66 + 14215200
GACCGUUU--GCUGAUGGUACAUCUAAUGUUUGCUAAUCCCGCACUGCAUUUAUGCAGAUGCCGUGUU
.((((((.--...))))))......................((((.((((((....)))))).)))). ( -14.90, z-score =  -0.67, R)
>droSim1.chr2R 14143383 66 + 19596830
GACCGUUU--GCUGAUGGUACAUCUAAUGUUUGCUAAUCCCGCACUGCAUUUAUGCAGAUGCCGUGCU
.((((((.--...))))))......................((((.((((((....)))))).)))). ( -17.40, z-score =  -1.51, R)
>consensus
GACCGUUU__GCUGAUGGUACAUCUAAUGUUUGCUAAUCCCGCACUGCAUUUAUGCAGAUGCCGUGUU
.((((((......))))))......................((((.((((((....)))))).)))). (-15.86 = -15.66 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:04 2011