| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,434,674 – 15,434,733 |
| Length | 59 |
| Max. P | 0.933968 |
| Location | 15,434,674 – 15,434,733 |
|---|---|
| Length | 59 |
| Sequences | 6 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 62.34 |
| Shannon entropy | 0.71115 |
| G+C content | 0.34600 |
| Mean single sequence MFE | -8.97 |
| Consensus MFE | -4.33 |
| Energy contribution | -2.86 |
| Covariance contribution | -1.47 |
| Combinations/Pair | 1.88 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.933968 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 15434674 59 + 21146708 UAUUACUUUUCAAAGCAAAAACUAUCGCAUUGGGAAACACUUUUUU-CAGUGUUUUAAAU .........((((.((..........)).))))((((((((.....-.)))))))).... ( -9.30, z-score = -2.33, R) >droEre2.scaffold_4845 9634225 58 + 22589142 UAUUAGUUUUUGAAGUAUUGACUAUCGCAUUGACCAACACUUUUUU-CAGUGUUUUACA- .....(((..((..(((.....)))..))..))).((((((.....-.)))))).....- ( -7.00, z-score = -0.64, R) >droYak2.chr2R 7399496 59 - 21139217 UAUUAGCUUUCACAGCCAUAACUAUCGCAUUGGUUAACACUUUUUUUCAGUGUUUUGCA- .....((......(((((............)))))((((((.......))))))..)).- ( -8.80, z-score = -1.29, R) >droSec1.super_1 12954233 53 + 14215200 -----UUUUUCGAAGCUAAAUCUAUCGCAUUGGGCAAUACUUUUUU-CAAUGCUUUAAA- -----.....................((((((((.((....)).))-))))))......- ( -7.80, z-score = -1.26, R) >droSim1.chr2R 14135992 53 + 19596830 -----UUUUUCGAAGCUAAAUCUAUCGCAUUGGGCAAUACUUUUUU-CAAUGCUUUAAA- -----.....................((((((((.((....)).))-))))))......- ( -7.80, z-score = -1.26, R) >droAna3.scaffold_13266 10041618 58 - 19884421 UACUAUUUCAAGAGGGCAACUCUGCUGGAGUUG-CAGCCCUGACCCCGACCCUGACAGG- ...............(((((((.....))))))-)...((((.............))))- ( -13.12, z-score = 0.30, R) >consensus UAUUAUUUUUCGAAGCAAAAACUAUCGCAUUGGGCAACACUUUUUU_CAGUGUUUUAAA_ ......................((..((((((...............))))))..))... ( -4.33 = -2.86 + -1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:03 2011