| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,433,046 – 15,433,140 |
| Length | 94 |
| Max. P | 0.651253 |
| Location | 15,433,046 – 15,433,140 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 80.33 |
| Shannon entropy | 0.32727 |
| G+C content | 0.37913 |
| Mean single sequence MFE | -20.97 |
| Consensus MFE | -12.21 |
| Energy contribution | -11.68 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.651253 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15433046 94 + 21146708 ---CCGAGAAAAUGCAAUUGAAAAUUCAUGCAAGACAAAAUAUGCAAAUUGCAUUUUUCUGGCCAGCAGGAAA---------CUGGAAGA--AAAACCAAAACGAUGC---------- ---(((..(((((((((((((....)).((((..........)))))))))))))))..)))....(((....---------))).....--................---------- ( -21.80, z-score = -2.51, R) >droEre2.scaffold_4845 9632562 94 + 22589142 ---UCGAGAAAAUGCAAUUGAAAAUUCAUGCAAGACCAAAUAUGCAAAUUGCAUUUUUCUGGCCAACAGGAAA---------CUGGAAUA--AAACCCAAAUCGAUCC---------- ---((((((((((((((((((....)).((((..........))))))))))))))))........(((....---------))).....--.........))))...---------- ( -21.30, z-score = -2.67, R) >droYak2.chr2R 7397757 94 - 21139217 ---UCGAGAAAAUGCAAUUGAAAAUUCAUGCAAGACAAAAUAUGCAAAUUGCACUUUUCUAACCAGCAGGAAA---------CUGGUAUA--AAAACCAAAUCGAUAC---------- ---((((((((((((((((((....)).((((..........))))))))))).))))).......(((....---------))).....--.........))))...---------- ( -19.80, z-score = -3.33, R) >droSec1.super_1 12952610 94 + 14215200 ---CCGAGAAAAUGCAAUUGAAAAUUCAUGCAAGACAAAAUAUGCAAAUUGCAUCUUUCUGGCCAGCAGGAAG---------CUGGAAGA--AAAACCAAAACGAUCC---------- ---((.(((((((((((((((....)).((((..........)))))))))))).)))))))(((((.....)---------))))....--................---------- ( -21.80, z-score = -2.19, R) >droSim1.chr2R 14134366 94 + 19596830 ---CCGAGAAAAUGCAAUUGAAAAUUCAUGCAAGACAAAAUAUGCAAAUUGCAUCUUUCUGGCCAGCAGGAAG---------CUGGAAGA--AAAACCAAAACGAUCC---------- ---((.(((((((((((((((....)).((((..........)))))))))))).)))))))(((((.....)---------))))....--................---------- ( -21.80, z-score = -2.19, R) >droAna3.scaffold_13266 10039639 118 - 19884421 CGCUGAAGAAAAUGCAAUUGAAAAUUCAUGCAAGACAAAAAAUGUAAAUUGCAUUUCGCUGGACGUCAGGGGGAGGACUAUGCCAGAAGACCAGAGCCAGAAUAAUGAGAACCGAUUC .(((...((((.(((((((((....)).((((..........))))))))))))))).((((...((.((.(........).)).))...)))))))..................... ( -19.30, z-score = 0.98, R) >consensus ___CCGAGAAAAUGCAAUUGAAAAUUCAUGCAAGACAAAAUAUGCAAAUUGCAUUUUUCUGGCCAGCAGGAAA_________CUGGAAGA__AAAACCAAAACGAUCC__________ ...........((((((((((....)).((((..........))))))))))))(((((((.....)))))))............................................. (-12.21 = -11.68 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:02 2011