Locus 4739

Sequence ID dm3.chr2R
Location 15,429,881 – 15,429,974
Length 93
Max. P 0.823202
window6504

overview

Window 4

Location 15,429,881 – 15,429,974
Length 93
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 96.82
Shannon entropy 0.05523
G+C content 0.50007
Mean single sequence MFE -23.58
Consensus MFE -23.08
Energy contribution -23.28
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.34
Structure conservation index 0.98
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.81
SVM RNA-class probability 0.823202
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 15429881 93 - 21146708
CAAAGUCAAUACAUCAACCACAACAAACAAGCGUCUUUGCA---ACGAGGGUGGCCACUAAAGUUGUAGUGCCCCUCUCGAGCCGGCUUAUAUCGC
..(((((.......................(((....))).---.((((((.((.(((((......))))).))))))))....)))))....... ( -24.20, z-score =  -1.77, R)
>droSim1.chr2R 14131036 93 - 19596830
CAAAGUCAAUACAUCAACCACAACAAACAAGCGCCUUUGCA---ACGAGGGUGGCCACUAAAGUUGUAGUGCCCCUCUCGAGCCGGCUUAUAUCGC
..(((((.......................(((....))).---.((((((.((.(((((......))))).))))))))....)))))....... ( -23.30, z-score =  -1.24, R)
>droSec1.super_1 12949296 93 - 14215200
CAAAGUCAAUACAUCAACCACAACAAACAAGCGCCUUUGCA---ACGAGGGUGGCCACUAAAGUUGUAGUGCCCCUCUCGAGCCGGCUUAUAUCGC
..(((((.......................(((....))).---.((((((.((.(((((......))))).))))))))....)))))....... ( -23.30, z-score =  -1.24, R)
>droYak2.chr2R 7394391 96 + 21139217
CAAAGUCAAUACAUCAAGCACAACAAACAAGCGUCUUUGCAACGACGAGGGUGGCCACUAAAGUUGUAGUACCCCUCUCGAGCCGGCUUAUAUCGC
..(((((.......................(((....)))..(((.(((((..((.((.......)).))..))))))))....)))))....... ( -21.70, z-score =  -0.70, R)
>droEre2.scaffold_4845 9629224 93 - 22589142
CAAAGUCAAUACAUCAGCCACAACAAACAAGCGUCUUUGCA---ACGAGGGUGGCCACUAAAGUUGUAGUGCCCCUCUCGAGCCGGCUUAUAUCGC
...............((((...........(((....))).---.((((((.((.(((((......))))).))))))))....))))........ ( -25.40, z-score =  -1.75, R)
>consensus
CAAAGUCAAUACAUCAACCACAACAAACAAGCGUCUUUGCA___ACGAGGGUGGCCACUAAAGUUGUAGUGCCCCUCUCGAGCCGGCUUAUAUCGC
..(((((.......................(((....))).....((((((.((.(((((......))))).))))))))....)))))....... (-23.08 = -23.28 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:35:01 2011