| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,423,478 – 15,423,569 |
| Length | 91 |
| Max. P | 0.519341 |
| Location | 15,423,478 – 15,423,569 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 92.54 |
| Shannon entropy | 0.10091 |
| G+C content | 0.54017 |
| Mean single sequence MFE | -30.43 |
| Consensus MFE | -23.16 |
| Energy contribution | -23.06 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.519341 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15423478 91 + 21146708 CAAAAGCGAGUGGGUGGGUGGGUGGCACAAGAAGCAGAAUGUAUGCUUUUGGCUUAGCCAACCAACCGUCCGACCCGACCAGUGAAUAAUG .....((..((((((.(((((.(((....(((((((.......)))))))(((...)))..))).))).)).)))).))..))........ ( -29.20, z-score = -1.32, R) >droSim1.chr2R 14124575 86 + 19596830 CAAAAGCGAGUGGGUGGGCGG----CACAAGAAGCAGAAUGUAUGCUUUUGGCUUAGCCCACCGACCGUCCGACC-GACCAGUGAAUAAUG .....(((.((.(((((((((----(...(((((((.......))))))).)))..))))))).)))))......-............... ( -31.70, z-score = -2.93, R) >droSec1.super_1 12942859 86 + 14215200 CAAAAGCGAGUGGGUGGGUGG----CACAAGGAGCAGAAUGUUUGCUUUUGGCUUAGCCCACCGACCGUCCGACC-GACCAGUGAAUAAUG .....(((.((.(((((((((----(...(((((((((...))))))))).)))..))))))).)))))......-............... ( -30.40, z-score = -2.05, R) >consensus CAAAAGCGAGUGGGUGGGUGG____CACAAGAAGCAGAAUGUAUGCUUUUGGCUUAGCCCACCGACCGUCCGACC_GACCAGUGAAUAAUG .....(((.((.(((((((..........(((((((.......)))))))......))))))).)))))...................... (-23.16 = -23.06 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:59 2011