| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,363,268 – 15,363,365 |
| Length | 97 |
| Max. P | 0.640962 |
| Location | 15,363,268 – 15,363,365 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 92.99 |
| Shannon entropy | 0.12652 |
| G+C content | 0.34423 |
| Mean single sequence MFE | -19.94 |
| Consensus MFE | -17.76 |
| Energy contribution | -17.64 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.640962 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15363268 97 + 21146708 GAAAAUCCAUAUGCAAAUAAUGAUAUGAAUGUGGUUUGAACUGAAUUCAAUUUGGAUUCGAAUCGAACUAAACCAAUCGAACAAAUUCGGUGAGUGA .......(((((.((.....)))))))....((((((((..(((((((.....)))))))..)))))))).((..((((((....))))))..)).. ( -21.30, z-score = -1.60, R) >droYak2.chr2R 7326418 97 - 21139217 GAAAAUGCAUAUGCAAAUAAUGAUAUGAAUGUGGUUUGAACUGAAUUCAAUUUGGAUUCGAACCGAACUAAACCAAUCGAACAAAUUCGGUGAGUGA .....(((....)))................((((((((((..(((...)))..).)))))))))......((..((((((....))))))..)).. ( -19.20, z-score = -1.19, R) >droEre2.scaffold_4845 9562131 84 + 22589142 GAAAAUGCAUAUGCAA-------------UGUGGUUUGAACUGAAUUCAAUUUGGAUUCGAACCGAACCAAACCAAUCGAACAAAUUCGGUGAGUGA .....(((....))).-------------..(((((((...(((((((.....)))))))...))))))).((..((((((....))))))..)).. ( -21.00, z-score = -1.87, R) >droSec1.super_1 12881767 97 + 14215200 GAAAAUGCAUAUGCAAAUAAUGAUAUGAAUGUGGUUUGAACUGAAUUCAAUUUGGAUUCGAACCGAACUAAACCAAUCGAACAAAUUUGGUGAGUGA .....(((....)))................((((((((((..(((...)))..).))))))))).(((..(((((..........))))).))).. ( -19.00, z-score = -1.41, R) >droSim1.chr2R_random 2651260 97 + 2996586 GAAAAUGCAUAUGCAAAUAAUGAUAUGAAUGUGGUUUGAACUGAAUUCAAUUUGGAUUCGAACCGAACUAAACCAAUCGAACAAAUUCGGUGAGUGA .....(((....)))................((((((((((..(((...)))..).)))))))))......((..((((((....))))))..)).. ( -19.20, z-score = -1.19, R) >consensus GAAAAUGCAUAUGCAAAUAAUGAUAUGAAUGUGGUUUGAACUGAAUUCAAUUUGGAUUCGAACCGAACUAAACCAAUCGAACAAAUUCGGUGAGUGA .....(((....)))................(((((((...(((((((.....)))))))...))))))).((..((((((....))))))..)).. (-17.76 = -17.64 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:56 2011