| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,351,127 – 15,351,200 |
| Length | 73 |
| Max. P | 0.991486 |
| Location | 15,351,127 – 15,351,200 |
|---|---|
| Length | 73 |
| Sequences | 4 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 54.11 |
| Shannon entropy | 0.69555 |
| G+C content | 0.51195 |
| Mean single sequence MFE | -21.10 |
| Consensus MFE | -6.70 |
| Energy contribution | -7.26 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.55 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.48 |
| SVM RNA-class probability | 0.991486 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15351127 73 - 21146708 UGGGUUUGCUUUUG-AAUGGCUAAAUGUGUAUUUGAGAGUCCGUCGCUGUGCGGUUUGUGGAUCGUAAGCCUUG .(((((((((((..-((((((.....)).))))..)))(((((((((...))))....))))).)))))))).. ( -18.80, z-score = -1.48, R) >droAna3.scaffold_13266 9954353 69 + 19884421 ----UUGGCUUCUGUGGAGAGUUUCUCUGUCGGUCUAACUGUCUCAGUGU-UAGUGUGUGGAUCGCAAGCCUUG ----..(((((....((((.....))))(.(((((((((((.(.....).-))))...)))))))))))))... ( -18.20, z-score = -1.12, R) >dp4.chr3 13276140 56 + 19779522 ----------------ACGAUCCACACGGCAGCAGAAGCAGCUUCAAUGU-CUA-GUGUGGAUCGUAAGCCUCG ----------------(((((((((((((((...((((...))))..)))-)..-)))))))))))........ ( -23.70, z-score = -4.30, R) >droPer1.super_2 2313335 56 + 9036312 ----------------ACGAUCCACACGGCAGCAGAAGCAGCUUCAAUGU-CUG-GUGUGGAUCGUAAGCCUCG ----------------(((((((((((((((...((((...))))..)))-)..-)))))))))))........ ( -23.70, z-score = -3.59, R) >consensus ________________ACGAUCCACACGGCAGCAGAAACAGCUUCAAUGU_CUG_GUGUGGAUCGUAAGCCUCG ................(((((((((((............................)))))))))))........ ( -6.70 = -7.26 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:52 2011