| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,338,159 – 15,338,259 |
| Length | 100 |
| Max. P | 0.604028 |
| Location | 15,338,159 – 15,338,259 |
|---|---|
| Length | 100 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 75.14 |
| Shannon entropy | 0.48317 |
| G+C content | 0.39170 |
| Mean single sequence MFE | -24.48 |
| Consensus MFE | -9.75 |
| Energy contribution | -9.87 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.604028 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15338159 100 - 21146708 AGAAAACAUGACGUCAUUUUAACCUAAAAUGGCUGAACCG----GUCGUCGUUGAACGGUUCGCAGAACGUAUAAGAGUUGAUCUUAUACGUAGAUGGGAU-AUA----------- ......(((...(((((((((...))))))))).((((((----.(((....))).)))))).....((((((((((.....))))))))))..)))....-...----------- ( -30.10, z-score = -2.86, R) >droSim1.chr2R 14051739 100 - 19596830 AGAAAACAUGACGUCAUUUUAACCUAAAAUGGCUGAACCG----GUCGUCGCUGAACGGUUCGCAGAACGUAUAAGAGUUGAUCUUAUACAUAGAUGGGAU-AUA----------- ......(((...(((((((((...))))))))).((((((----.(((....))).)))))).......((((((((.....))))))))....)))....-...----------- ( -26.20, z-score = -1.94, R) >droSec1.super_1 12854148 100 - 14215200 AGAAAACAUGACGUCAUUUUAACCUAAAAUGGCUGAACCG----GUCGUCGUUGAACGGUUCGCAGAACGUAUAAGAGUUGAUCUUAUACAUAGAUGGGAU-AUA----------- ......(((...(((((((((...))))))))).((((((----.(((....))).)))))).......((((((((.....))))))))....)))....-...----------- ( -27.00, z-score = -2.18, R) >droYak2.chr2R 7301091 100 + 21139217 AGAAAACAUGACGUCAUUUUAACCUAAAAUGGCUGAACCG----GUCGCCGUUGACCGGUUCGCAGAGCGUAUAAGAGUUGAUCUUAUACAUAGAUGGGAU-AUA----------- ......(((...(((((((((...))))))))).((((((----((((....)))))))))).......((((((((.....))))))))....)))....-...----------- ( -32.70, z-score = -3.72, R) >droEre2.scaffold_4845 9536778 100 - 22589142 AGAAAACAUGACGUCAUUUUAACCUAAAAUGGCUGAACCG----GUUGUCGUUGACCGGUUCGCAGAGCGUAUAAGAGUUGAUCUUAUACAUAGAUGGGAU-AUA----------- ......(((...(((((((((...))))))))).((((((----(((......))))))))).......((((((((.....))))))))....)))....-...----------- ( -30.90, z-score = -3.34, R) >droAna3.scaffold_13266 17956644 106 + 19884421 AGAAAACAUGACGUCAUUUUAACCUAAAAUGGCUGAACUGAACCGUCGCCGUUGACCGGUUCGCA----GUAUAAGAGU-----AUACACAUAAAUGGGAU-GUAUAAUAUACCUA .....((((..((((((((((...)))))))))......(((((((((....))).))))))...----(((((....)-----))))........)..))-))............ ( -21.80, z-score = -0.61, R) >dp4.Unknown_singleton_1898 77183 81 + 80150 AGAAAACAUGACGUCAUUUUAACCUAAAAUGGCUGAACCA----GUUGUCGGUGACCGGUC--------GUAUAAGAGAGAACUAUACAUAUU----------------------- .......(((..(((((((((...)))))))))......(----(((.(((....)...((--------......)))).))))...)))...----------------------- ( -13.60, z-score = 0.08, R) >droPer1.super_4 6590405 81 - 7162766 AGAAAACAUGACGUCAUUUUAACCUAAAAUGGCUGAACCG----GUUGUCGGUGACCGGUC--------GUAUAAGAGAGAACUAUACAUAUU----------------------- ............(((((((((...))))))))).((.(((----(((......))))))))--------(((((.........))))).....----------------------- ( -18.80, z-score = -1.39, R) >droWil1.scaffold_180701 1304892 99 - 3904529 AGAAAAUCUGACGUCAUUUUUACCUAAAAUGGCUGAACCG----GUUCUUGUUGACCGAUUCGCA--AUGUAUAAGAGAGUAGAGUAUAUAGAGAUAGAUUCAUA----------- ......(((.((((((((((.....)))))))).(((.((----(((......))))).)))...--..))...))).....((((.(((....))).))))...----------- ( -18.80, z-score = -0.43, R) >droVir3.scaffold_12875 11825520 90 - 20611582 GGAAAACAUGACGUCAUUUU-ACCUAAAAUGGCUGAACCG-------GUUGUCGACCGGUUCGCAAUG-ACAUAAAAUAUAUACAUAUAUACGUGUACC----------------- .....(((((..((((((..-.((......))..((((((-------(((...)))))))))..))))-)).....(((((....))))).)))))...----------------- ( -24.90, z-score = -2.95, R) >consensus AGAAAACAUGACGUCAUUUUAACCUAAAAUGGCUGAACCG____GUCGUCGUUGACCGGUUCGCAGAACGUAUAAGAGUUGAUCUUAUACAUAGAUGGGAU_AUA___________ .......(((..((((((((.....)))))))).((((((................))))))...........................)))........................ ( -9.75 = -9.87 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:51 2011