| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,272,180 – 3,272,241 |
| Length | 61 |
| Max. P | 0.632977 |
| Location | 3,272,180 – 3,272,241 |
|---|---|
| Length | 61 |
| Sequences | 6 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 76.96 |
| Shannon entropy | 0.41447 |
| G+C content | 0.46894 |
| Mean single sequence MFE | -12.59 |
| Consensus MFE | -9.07 |
| Energy contribution | -8.35 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.632977 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3272180 61 - 23011544 AGCAAAUGCUGCAAAU----GACAAUU-CUAGAGUCAAUAAGCCGGGGCACAAAUCCCAGCAGCCG--- .......(((((...(----(((....-.....)))).......((((......)))).)))))..--- ( -16.30, z-score = -1.70, R) >droSim1.chr2L 3209038 61 - 22036055 AGCAAAUGCUGCAAAU----GACAAUU-CUAGAGUCAAUAAGCCGGGGCUCAAAUCCCAGCAGCCG--- .......(((((...(----(((....-.....)))).......((((......)))).)))))..--- ( -16.30, z-score = -1.48, R) >droSec1.super_5 1414526 60 - 5866729 AGCAAAUGCUGCAAAU----GACAAUU-CUAGAGUCAAUAAGCCGGGGCAC-AAUCCCAGCAGCCG--- .......(((((...(----(((....-.....)))).......((((...-..)))).)))))..--- ( -16.10, z-score = -1.58, R) >droYak2.chr2L 3255452 62 - 22324452 AGCAAAUGCUGCAAAU----GACAAUUCCUAGAGUCAAUAAGCCGAGGUUCAAAUCCCAGCAGCCG--- .......(((((...(----(((..........)))).........((........)).)))))..--- ( -12.00, z-score = -1.24, R) >droEre2.scaffold_4929 3303692 60 - 26641161 AGCAAAUGCUGCAAAU----GACAAUU-CCAGAGUCAAUAAGCCG-CGCACAAAUCCCAGCAGCCG--- .......(((((...(----(((....-.....))))....((..-.))..........)))))..--- ( -11.10, z-score = -1.08, R) >droAna3.scaffold_12943 26542 69 - 5039921 AUCAAAUUCUCCAAAUCCUCCAAAGUUCCUGGCUUUCAGAAUUACAGAAACACACAAAGAAAGACAACA ........................(((.(((.............))).))).................. ( -3.72, z-score = 0.83, R) >consensus AGCAAAUGCUGCAAAU____GACAAUU_CUAGAGUCAAUAAGCCGGGGCACAAAUCCCAGCAGCCG___ .......(((((........(((..........))).....((....))..........)))))..... ( -9.07 = -8.35 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:30 2011