| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,324,723 – 15,324,827 |
| Length | 104 |
| Max. P | 0.848985 |
| Location | 15,324,723 – 15,324,827 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 92.79 |
| Shannon entropy | 0.12473 |
| G+C content | 0.51154 |
| Mean single sequence MFE | -32.06 |
| Consensus MFE | -30.22 |
| Energy contribution | -29.62 |
| Covariance contribution | -0.60 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.848985 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15324723 104 + 21146708 UUCUCCGUAGUAGCCAGUGUGACCGAAUCCUUCUGCUGAUAAUAAGCCAGCAGGGCUGUUCCCGAAUUGGAACUGGUUCACUGGAGCGCUACACAUCAUCUGUG ......(((((..((((((.(((((.....((((((((.........))))))))..(((((......))))))))))))))))...)))))............ ( -36.10, z-score = -2.59, R) >droEre2.scaffold_4845 9523366 104 + 22589142 UUCUCCGUAUUAGCCAGUGUGACCGAAUCCUUAUGCUGAUAAUAGGCCAGCUGGGCUGUUCCCGAUUUGGAACCGGUUCACUGGAUCAGUUCACAUCGUCUGUG .............((((((.(((((...(((...((((.........)))).)))..(((((......)))))))))))))))).......((((.....)))) ( -29.60, z-score = -0.83, R) >droYak2.chr2R 7287391 104 - 21139217 UUCUCCGUAGUAGCCAGUGUGACCGAAUCCGUAUGCUGAUAAUAAGCCAACUGGGCUGUUCCCGAUUUGGAACCGGUUCGCUGGAGCAGUUUACAUCGUCUGUG .............((((((.(((((...................((((.....))))(((((......)))))))))))))))).((((..........)))). ( -28.70, z-score = -0.54, R) >droSec1.super_1 12840719 104 + 14215200 UUCUCCGUAGUAGCCAGUGUGACCGAAUCCUUCUGCUGAUAAUAAGCCACCUGGGCUGUUCCCGAAUUGGAACUGGUUCACUGGAGCGCUACACAUCGUCUGUG ......(((((..((((((.(((((...................((((.....))))(((((......))))))))))))))))...)))))............ ( -32.20, z-score = -1.73, R) >droSim1.chr2R 14036965 104 + 19596830 UUCUCCGUAGUAGCCAGUGUGACCGAAUCCUUCUGCUGAUAAUAAGCCAGCUGGGCUGUUCCCGAAUUGGAACUGGUUCACUGGAGCGCUACACAUCGUCUGUG ......(((((..((((((.(((((...(((...((((.........)))).)))..(((((......))))))))))))))))...)))))............ ( -33.70, z-score = -1.83, R) >consensus UUCUCCGUAGUAGCCAGUGUGACCGAAUCCUUCUGCUGAUAAUAAGCCAGCUGGGCUGUUCCCGAAUUGGAACUGGUUCACUGGAGCGCUACACAUCGUCUGUG ......(((((..((((((.(((((...................((((.....))))(((((......))))))))))))))))...)))))............ (-30.22 = -29.62 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:49 2011