| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,314,687 – 15,314,780 |
| Length | 93 |
| Max. P | 0.915964 |
| Location | 15,314,687 – 15,314,780 |
|---|---|
| Length | 93 |
| Sequences | 14 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 66.29 |
| Shannon entropy | 0.71641 |
| G+C content | 0.40240 |
| Mean single sequence MFE | -23.17 |
| Consensus MFE | -11.67 |
| Energy contribution | -10.91 |
| Covariance contribution | -0.76 |
| Combinations/Pair | 1.63 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.915964 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15314687 93 + 21146708 ----------------UUAGUUUAAAAUUUUAAGGUAAAUGGGUUGAUGUAAUCAUUGAUGACCGUUUGCCCACUUAUAAUGGAGAGCUGAUGUACAUGCACUCCACGG ----------------.................(((((((((((..(((....)))..))..))))))))).........(((((.((((.....)).)).)))))... ( -24.90, z-score = -2.28, R) >droSim1.chr2R 14026543 91 + 19596830 -----------------UUAUUUAAAAUUU-AAGGUAAAUGGGUUGAUGUGAUCAUUGAUGACCGUUUGCCCACUUAUAAUGGAGAGCUGAUGUACAUGCACUCCACGG -----------------.............-..(((((((((((..(((....)))..))..))))))))).........(((((.((((.....)).)).)))))... ( -24.90, z-score = -2.39, R) >droSec1.super_1 12830696 92 + 14215200 -----------------UUAUUUAAAAUUUUAAGGUAAAUGGGUUGAUGUGAUCAUUGAUGACCGUUUGCCCACUUAUAAUGGAGAGCUGAUGUACAUGCACUCCACGG -----------------................(((((((((((..(((....)))..))..))))))))).........(((((.((((.....)).)).)))))... ( -24.90, z-score = -2.37, R) >droYak2.chr2R 7277342 94 - 21139217 ---------------UUGUUUUGACAUUUUUCAGGUAAAUGGGUUGAUGUGAUCAUUGAUGACCGUUUGCCCACCUACAAUGGUGAGCUGAUGUACAUGCACUCCACGG ---------------.(((....(((((.....(((((((((((..(((....)))..))..)))))))))((((......))))....)))))....)))........ ( -26.20, z-score = -1.14, R) >droEre2.scaffold_4845 9513339 94 + 22589142 ---------------UUAUUUUUAAUGUUUCCAGGUAAAUGGGUUGAUGUCAUCAUUGAUGACCGUUUGCCCACGUAUAAUGGUGAGCUGAUGUACAUGCACUCCACGG ---------------...............((..(((..(((((.(((((((((...))))).)))).)))))..)))..(((.(.((((.....)).)).).))).)) ( -22.00, z-score = -0.04, R) >droAna3.scaffold_13266 17933602 86 - 19884421 -----------------------UAAUUAAAAAGGUAAAUGGGUGGAUGUGAUCAUUGAUGACCGUCUUCCCACCUACAACGGGGAGCUCAUGUACAUGCAUUCGACGG -----------------------...........(((..((((.(((((.(.(((....))))))))).))))..)))..((..(((..(((....)))..)))..)). ( -20.00, z-score = 0.04, R) >dp4.chr3 18130419 109 - 19779522 CAACUAAUAAUUAUUUAUGAACCAAUUAAAUCAGGUAAAUGGGUAGAUGUGACUAUUGAUGACCGUUUGCCAACCUCUCGGGGGGAGCUGGUGUACAUGCAUUCUACCG ...............((((.((((.........(((((((((...((((....)))).....)))))))))..((((....))))...))))...)))).......... ( -23.10, z-score = 0.40, R) >droPer1.super_2 7210202 109 - 9036312 CAACUAAUAAUUAUUUAUGAACCAAUUAAAACAGGUAAAUGGGUAGAUGUGACUAUUGAUGACCGUUUGCCAACCUCUCGGGGGGAGCUGGUGUACAUGCAUUCUACCG ...............((((.((((.........(((((((((...((((....)))).....)))))))))..((((....))))...))))...)))).......... ( -23.10, z-score = 0.28, R) >droWil1.scaffold_180701 1273531 103 + 3904529 ------UAAUUUGCAAUAAAUUAUUUAUGAACAGGUAAAUGGGUAGACGUCAUUGUGGAUGAUCGUUUACCCACAUUCCGUGGAGAGCUAUUAUAUAUGCAUUCAACGG ------..(((((..((((.....))))...)))))...(((((((((((((((...))))).))))))))))....((((.(((.((..........)).))).)))) ( -27.00, z-score = -2.30, R) >droVir3.scaffold_12875 8768273 88 - 20611582 ---------------------UGAUUUUUAACAGGUAAAUGGGUUGACGUGGUUAUUGAUGACCGUUUGCCAACGUAUCGUGGAGAGCUACUGUAUAUGCAUUCGGCUG ---------------------..........(((.(.((((.((..((((((((.((.((((.((((....))))..)))).)).)))))).))..)).)))).).))) ( -18.90, z-score = 0.41, R) >droMoj3.scaffold_6496 15018405 89 + 26866924 --------------------GUACAUAUAAUCAGGUAAAUGGGUUGAUGUAAUUAUUGAUGAUCGUUUGCCAACGUAUCGAGGAGAGUUACUCUAUAUGCAUUCGGCUG --------------------...((((((....(((((((((((..(((....)))..))..)))))))))........(((........))))))))).......... ( -19.30, z-score = -0.32, R) >droGri2.scaffold_15245 6634005 88 - 18325388 --------------------UUAAAUAU-AAUAGGUAAAUGGGUCGACGUUAUUAUUGAUGAUCGUUUGCCUACCAGCCGUGGAGAAUUACUUUAUAUGCAUUCCGCGG --------------------........-..((((((((((((((((........)))))..)))))))))))....((((((((.((........))...)))))))) ( -23.20, z-score = -1.76, R) >apiMel3.Group2 12243269 102 + 14465785 -------UUGUUAAAAAUAGAUUUUGGCAAUACGGUAGAUGGGUAGACGUGGUUAUCGAUGAUAGAUUGCCAACUUAUCGUGGUGAAUUGGUAUAUCUACAUUCAGCAG -------.((((.((..(((((..((.((((.((.(((((((((.....((((.(((.......))).))))))))))).)).)).)))).)).)))))..)).)))). ( -23.00, z-score = -0.93, R) >triCas2.chrUn_13 120474 100 - 619829 ---------AUUGCUUCCAGAUUCUGGCAGUAUGGACGCUGGAUUGAUGUUGUUAUUGAUGAUCGUUUGCCUACAUACAGAGGCGAAUUGGUGUUUUUGCACUCUACUG ---------..((((..........))))(((..(((((..(((..(((....)))..)).....(((((((........))))))))..)))))..)))......... ( -23.90, z-score = -0.19, R) >consensus _________________U_AUUUAAUAUAAUCAGGUAAAUGGGUUGAUGUGAUUAUUGAUGACCGUUUGCCCACCUAUAGUGGAGAGCUGAUGUACAUGCAUUCCACGG .................................(((((((((((..(((....)))..))..))))))))).........((..(((..............)))..)). (-11.67 = -10.91 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:48 2011