| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,312,098 – 15,312,189 |
| Length | 91 |
| Max. P | 0.797403 |
| Location | 15,312,098 – 15,312,189 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 97.58 |
| Shannon entropy | 0.03994 |
| G+C content | 0.53626 |
| Mean single sequence MFE | -28.90 |
| Consensus MFE | -28.04 |
| Energy contribution | -28.20 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.797403 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15312098 91 + 21146708 AAUACACUUUCACACACAAGCGCCGCGCCAUAUACACACAUUCGUGUCCGUGCGUGUGUGUGUAUGAACGGCGUCGCAUUCUCGUCACCGG ...................(((..(((((.(((((((((((.(((......))).)))))))))))...)))))))).............. ( -29.40, z-score = -1.33, R) >droSim1.chr2R 14024007 91 + 19596830 AAUACACUUUCACACACAAGCGCCGCGCCAUAUACACACAUUCGUGUCCGUGCGUGUGUGUGUAUGAACGGCGUCGCAUUCUCGUCACCGG ...................(((..(((((.(((((((((((.(((......))).)))))))))))...)))))))).............. ( -29.40, z-score = -1.33, R) >droSec1.super_1 12828167 91 + 14215200 AAUACACUUUCACACACAAGAGCCGCGCCAUAUACACACAUUCGUGUCCGUGCGUGUGUGUGUAUGAACGGCGUCGCAUUCUCGUCACCGG ...............((.(((((.(((((.(((((((((((.(((......))).)))))))))))...))))).))..))).))...... ( -29.50, z-score = -1.59, R) >droYak2.chr2R 7274759 91 - 21139217 AAUACACUUUCGCACACAAGCGUCGCGCCAUAUACACACAUUCGUGUCCGUGCGUGUGUGUGUAUCAACGGCGUCGCAUUCUCGUCACCGG ...................(((..(((((..((((((((((.(((......))).))))))))))....)))))))).............. ( -28.10, z-score = -1.37, R) >droEre2.scaffold_4845 9510790 91 + 22589142 AAUACACUUUCGCACACAAGCGUCGCGCCAUAUACACACAUUCGUGUCCGUGCGUGUGUGUGUAUCAACGGCGUCGCAUUCUCGUCACCGG ...................(((..(((((..((((((((((.(((......))).))))))))))....)))))))).............. ( -28.10, z-score = -1.37, R) >consensus AAUACACUUUCACACACAAGCGCCGCGCCAUAUACACACAUUCGUGUCCGUGCGUGUGUGUGUAUGAACGGCGUCGCAUUCUCGUCACCGG .....................((.(((((.(((((((((((.(((......))).)))))))))))...))))).)).............. (-28.04 = -28.20 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:47 2011