| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,229,778 – 15,229,893 |
| Length | 115 |
| Max. P | 0.701602 |
| Location | 15,229,778 – 15,229,893 |
|---|---|
| Length | 115 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.17 |
| Shannon entropy | 0.45858 |
| G+C content | 0.52610 |
| Mean single sequence MFE | -38.23 |
| Consensus MFE | -25.87 |
| Energy contribution | -25.96 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.701602 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15229778 115 - 21146708 -----GUGACAACUCUACUCACCGGCGAUGGGUUGUUGUUGGUGAAUACGGAACGCUGGCGCACACCAUUUGGAGCCUUGGUGGGCGAGCGCAAGAUGUUAUUGAUCUUGUCGUUCAACU -----.............(((((((((((.....))))))))))).....(((((((.((.(.(((((...(....).)))))))).)))(((((((.......))))))).)))).... ( -40.30, z-score = -1.62, R) >droSim1.chr2R 13941930 115 - 19596830 -----GUGACAACUCUACUAACCGGCGAUGGGUUGUUGUUGGUGAAAACGGAUCGCUGGCGCACACCAUUUGGAGCCUUUGUGGGCGAGCGCAAGAUGUUGUUGAUCUUGUCGUUCAACU -----................(((..(((((..(((.((..((((.......))))..)))))..)))))))).((((....))))(((((((((((.......)))))).))))).... ( -37.20, z-score = -0.77, R) >droSec1.super_1 12743276 115 - 14215200 -----GUGACAACUCUACUCACCGGCGAUGGGUUGUUGUUGGUGAAAACGGAACGCUGGCGCACACCAUUUGGAGCCUUGGUGGGCGAGCGCAAGAUGUUGUUGAUCUUGUCGUUCAACU -----.............(((((((((((.....))))))))))).....(((((((.((.(.(((((...(....).)))))))).)))(((((((.......))))))).)))).... ( -40.30, z-score = -1.19, R) >droYak2.chr2R 7192337 120 + 21139217 AUGGAGUGACAACUCUACUCACCGGCGACGGAUUGUUGUUGGUGAACACGGAACGCUGGCGCACACCAUUGGGCGCCUUGGUGGGCGAGCGCAAGAUGUUGUUGAUCUUGUCGUUCAACU .((((((....)))))).(((((((((((.....))))))))))).....(..(((((((((.((....)).)))))..))))..)(((((((((((.......)))))).))))).... ( -49.10, z-score = -2.79, R) >droEre2.scaffold_4845 9427164 119 - 22589142 -AUGGCUGACAACUCUACUCACCGGCGACGGAUUGUUGUUGGUGAAAACCGAGCGCUGGCGCACGCCAUUUGGAGUCUUGGUGGGCGAGCGCAGGAUGUUGUUGAUCUUGUCGUUCAGCU -..(((((((((((((..(((((((((((.....))))))))))).......(((((.((.(.(((((..........)))))))).))))).))).))))..(((...)))..)))))) ( -47.40, z-score = -1.96, R) >droAna3.scaffold_13266 17834644 110 + 19884421 ----------GUGGAUACUUACCGGUGAGGGAUUGUUGUUGGUGUAGACAGAACGCUGGCGGACACCGUUGGGGGCCUUGGUCGGCGAACGGAGAAUGUUGUUGAUCUUGUCGUUCAUCU ----------((((((.((((.(((((........((((..((((.......))))..)))).))))).))))(((...(((((((.((((.....)))))))))))..))))))))).. ( -33.00, z-score = 0.19, R) >dp4.chr3 7387183 113 - 19779522 ----GCUUGGAAUUUCACUUACCGGUGAUGG---GUUGUUGGUGUAGACGGAGCGCUGGCGCACCCCGUUGGACGGCUUGGUGGGCGAGCGCAAGAUGUUGUUGAUUUUGUCGUUCAUCU ----..........(((((....))))).((---(((((..((((.......))))..))).)))).(.((((((((..(((.(((((.(....)...))))).)))..)))))))).). ( -38.10, z-score = -0.34, R) >droPer1.super_2 7589480 113 - 9036312 ----GCUUGGAAUUUCACUUACCGGUGAUGG---GUUGUUGGUGUAGACGGAGCGCUGGCGCACCCCGUUGGACGGCUUGGUGGGCGAGCGCAAGAUGUUGUUGAUUUUGUCGUUCAUCU ----..........(((((....))))).((---(((((..((((.......))))..))).)))).(.((((((((..(((.(((((.(....)...))))).)))..)))))))).). ( -38.10, z-score = -0.34, R) >droWil1.scaffold_180697 442694 113 - 4168966 -------AAGAAAAAAACUAACCGGAGAUGGAUUAUUGUUGGUAUAGACGGAACGCUGGCGCACACCAUUUGGCGUUUUGGUGGGUGAGCGAAGGAUAUUGUUAAUCUUAUCGUUCAUCU -------..........((((((((.((((...)))).))))).))).((((((((..(..........)..))))))))..(((((((((((((((.......))))).)))))))))) ( -31.10, z-score = -1.68, R) >droMoj3.scaffold_6496 14942829 106 + 26866924 --------------GAACUUACCGGAGAUGGGUUGUUGUUGGUGUACACCGAGCGUUGACGCACGCCAUUCGGAGACUUUGUGGGCGAGCGCAAAAUGUUGUUAAUCUUGUCGUUGGUCU --------------......(((((.((..((.......((((....))))((((((..(((.((((....(....)......)))).)))...))))))......))..)).))))).. ( -29.60, z-score = 0.59, R) >droVir3.scaffold_12875 2335456 106 + 20611582 --------------GAACUUACCGGCGACGGGUUGUUGUUGGUGUACACCGAUCGCUGGCGCACGCCAUUCGGAGCUUGGGUGGGAGAGCGCAAGAUGUUGUUGAUCUUGUCGUUCAUCU --------------...(((((((((..(((((.((.((((((....)))))).)).(((....))))))))..)))..)))))).(((((((((((.......)))))).))))).... ( -40.50, z-score = -1.54, R) >droGri2.scaffold_15245 13930760 106 + 18325388 --------------GAACUUACCGGUGAUGGGAUGUUGUUGGUGUACACGGAGCGCUGGCGCACUCCAUUUGGAACUUUGGUGGGCGAGCGCAAGAUGUGGUUGAUCUUGACAUUCAUCU --------------.....((((((..((.....))..))))))........(((((.((.((((((....)))......))).)).))))).(((((..(((......)))...))))) ( -34.10, z-score = -0.95, R) >consensus ______UGACAACUCUACUUACCGGCGAUGGGUUGUUGUUGGUGUACACGGAACGCUGGCGCACACCAUUUGGAGCCUUGGUGGGCGAGCGCAAGAUGUUGUUGAUCUUGUCGUUCAUCU ...................((((((((((.....))))))))))......(((((((.((.(((................))).)).)))(((((((.......))))))).)))).... (-25.87 = -25.96 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:41 2011