| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,269,335 – 3,269,426 |
| Length | 91 |
| Max. P | 0.641708 |
| Location | 3,269,335 – 3,269,426 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 71.89 |
| Shannon entropy | 0.46962 |
| G+C content | 0.36294 |
| Mean single sequence MFE | -15.82 |
| Consensus MFE | -8.60 |
| Energy contribution | -8.20 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.641708 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3269335 91 - 23011544 AAAUUUUGUCUCUGAGGCCCUAGUUCAUCUGUCAUAUCUGACAGUU-AGUCUAAAUAAAUAUUGUCUUCCAACCUAAAAUAAACACUAAACA ..((((((.....(((((..(((.....((((((....))))))..-...)))(((....))))))))......))))))............ ( -10.10, z-score = -0.44, R) >droEre2.scaffold_4929 3300801 71 - 26641161 --------UCUCUGGAGCCCUGGUUCAUCUGUCAUAACUGACAGUUUGAGCU-AACAAAUAUUGUGUUCCACACUAAAGA------------ --------....((((((..(((((((.((((((....))))))..))))))-)(((.....))))))))).........------------ ( -21.40, z-score = -3.01, R) >droYak2.chr2L 3252454 72 - 22324452 --------UCUCUGAGGCCCUGGUUCAUCUGUCACAACUGACAGUUUGAGCCAAAUAAAUAUUGCGCUCUAAACUUAAUA------------ --------.....(((((..(((((((.((((((....))))))..)))))))(((....))))).)))...........------------ ( -19.10, z-score = -3.26, R) >droSec1.super_5 1411639 92 - 5866729 AAAUUAUGGCUCUGAGGCCCUGGUUCAUCUGUCAUAUCUGAUAGUUAAGGCUAAAUAAAUAAUGUGUUCCACACCAAAAUAAACACUAAGCA ..(((((((((....)))).(((((...((((((....))))))....))))).....)))))(((((.............)))))...... ( -14.52, z-score = 0.35, R) >droSim1.chr2L 3206201 92 - 22036055 AAAUUUUGUCUCUGAGGCCCUGGUUCAUCUGUCAUAUCUGAUAGUUAAGGCUAAAUAAAUAUUAUGUUCCGAACCAAAAUAAACACUAAACA .......(((.....)))..((((((..((((((....))))))....((....(((.....)))...))))))))................ ( -14.00, z-score = -0.64, R) >consensus AAAUU_UGUCUCUGAGGCCCUGGUUCAUCUGUCAUAUCUGACAGUUAAGGCUAAAUAAAUAUUGUGUUCCAAACUAAAAUAAACACUAA_CA ....................(((((...((((((....))))))....)))))....................................... ( -8.60 = -8.20 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:29 2011