| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,210,819 – 15,210,913 |
| Length | 94 |
| Max. P | 0.720572 |
| Location | 15,210,819 – 15,210,913 |
|---|---|
| Length | 94 |
| Sequences | 8 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 70.29 |
| Shannon entropy | 0.50941 |
| G+C content | 0.43877 |
| Mean single sequence MFE | -28.08 |
| Consensus MFE | -10.17 |
| Energy contribution | -11.08 |
| Covariance contribution | 0.91 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.720572 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15210819 94 - 21146708 UUAGUUGUUGGAAAUCGCCAGAAUUUUGCCG----AUCAUUGAUAAAUGAUAAAUGGUUAAAACGGCUAUUGACUCUGCCAGG------GCCGAAAAUCCAUAU-------------- ........((((..(((((....(((.((((----((((((....))))))...)))).)))..(((..........)))..)------).)))...))))...-------------- ( -20.50, z-score = -0.67, R) >droAna3.scaffold_13266 17815855 114 + 19884421 UUAGUUGCGUGGAAACGGCCAGAAUUUGCCG----AUCAUUGAUAAAUGAUAAAUGGCCAAAACGGUUAUUGACUCGGCUAAGCAGCCAGCCACCAGCCGAAACCGCAACUGUUUGUC .((((((((.(....)(((((..........----((((((....))))))...)))))....(((((..((.((.((((....)))))).))..)))))....))))))))...... ( -37.82, z-score = -3.19, R) >droPer1.super_2 7570588 88 - 9036312 -----CAUUAGUUGG-GGCAGAGAGCCGC------AUCAUUGUUAAAUGAUAAAUGGCCAAAACGGUUAUUGACUCUGCCCAG----CCGCAGACGGCCCUGCC-------------- -----.........(-(((((((......------((((((....)))))).(((((((.....)))))))..)))))))).(----(((....))))......-------------- ( -32.60, z-score = -2.78, R) >dp4.chr3 7368996 88 - 19779522 -----CAUUAGUUGG-GGCAGAGAGCCGC------AUCAUUGUUAAAUGAUAAAUGGCCAAAACGGUUAUUGACUCUGCCCAG----CCGCAGACGGCCCUGCC-------------- -----.........(-(((((((......------((((((....)))))).(((((((.....)))))))..)))))))).(----(((....))))......-------------- ( -32.60, z-score = -2.78, R) >droSim1.chr2R 13921627 94 - 19596830 UUAGUUGUUGGAUAUCGGCAGAAUUUUGCCG----AUCAUUGAUAAAUGAUAAAUGGGAAAAACGGCUAUUGACUCUGCCAGG------GCCGAAAAUCCAUAU-------------- ........(((((.(((((....((((.(((----((((((....))))))...))).))))..(((..........)))...------)))))..)))))...-------------- ( -26.30, z-score = -2.19, R) >droSec1.super_1 12724495 94 - 14215200 UUAGUUGUUGGAUAUCGGCAGAAUUUUGCCG----AUCAUUGAUAAAUGAUAAAUGGGAAAAACGGCUAUUGACUCUGCCAGG------GCCGAAAAUCCAUAU-------------- ........(((((.(((((....((((.(((----((((((....))))))...))).))))..(((..........)))...------)))))..)))))...-------------- ( -26.30, z-score = -2.19, R) >droYak2.chr2R 7172746 82 + 21139217 -------UUAGUUGCCG-----AUUUUGCCG----AUCAUUGAUAAAUGAUAAAUGGGAGAAACGGUUAUUGACUCUGCCAGG------GCCGAAAAUCCAUAU-------------- -------(((((.((((-----.((((.(((----((((((....))))))...))).)))).)))).))))).((.((....------)).))..........-------------- ( -20.50, z-score = -1.43, R) >droEre2.scaffold_4845 9408723 98 - 22589142 UUAGUUGGUGGAAAGCGGCUGAAUUUUGCCGCUGAAUCAUUGAUAAAUGAUAAAUGGGAAAAACGGUUAUUGACUCCGCCAGG------GCCGAAAAUCCAUAU-------------- .....(((((((.((((((........))))))..((((((....)))))).(((.(......).)))......)))))))((------(.......)))....-------------- ( -28.00, z-score = -1.96, R) >consensus UUAGUUGUUGGAUAGCGGCAGAAUUUUGCCG____AUCAUUGAUAAAUGAUAAAUGGGAAAAACGGUUAUUGACUCUGCCAGG______GCCGAAAAUCCAUAU______________ ................((((((.....((((....((((((....))))))............)))).......))))))...................................... (-10.17 = -11.08 + 0.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:37 2011