| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,207,489 – 15,207,573 |
| Length | 84 |
| Max. P | 0.611661 |
| Location | 15,207,489 – 15,207,573 |
|---|---|
| Length | 84 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 82.13 |
| Shannon entropy | 0.33372 |
| G+C content | 0.46846 |
| Mean single sequence MFE | -23.48 |
| Consensus MFE | -13.06 |
| Energy contribution | -15.12 |
| Covariance contribution | 2.06 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.611661 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15207489 84 - 21146708 ------CUAUUUGAAUUUGCAACUGCAGACACGCAAUGUAGAGGCUUACGGAAUUUUUUCCGACUUUUGCAUGGGCUGUCAGAACACCUG ------...........(((....)))((((.((.(((((((((....(((((....))))).)))))))))..)))))).......... ( -23.80, z-score = -2.74, R) >droSim1.chr2R 13918292 83 - 19596830 ------CUAUUUGAAUUUGCAACUGCAGACACGCAAUGUAGAGGCUUACGGAA-UUUUCCCGACUUUUGCAUGGGCUGUCAGAACACCUG ------...........(((....)))((((.((.(((((((((....(((..-.....))).)))))))))..)))))).......... ( -20.60, z-score = -1.43, R) >droSec1.super_1 12721183 83 - 14215200 ------CUAUUUGAAUUUGCAACUGCAGACACGCAAUGUAGAGGCUUACGGAA-UUUUCCCGACUUUUGCAUGGGCUGUCAGAACACCUG ------...........(((....)))((((.((.(((((((((....(((..-.....))).)))))))))..)))))).......... ( -20.60, z-score = -1.43, R) >droYak2.chr2R 7169321 89 + 21139217 CUAUUCGUAUUUGAAUUUGCAACUGCAGACACGCAAUGCAGAGGUUUACGGCA-UUUUCCAGGCUUUUGCAUGGGCUGUCAGAACACCUG ...((((((.(((......))).))).((((.((.((((((((((((..((..-....))))))))))))))..)))))).)))...... ( -24.70, z-score = -1.39, R) >droEre2.scaffold_4845 9405402 83 - 22589142 ------CUAUUCGAAUUUGCAACUGCAGACACGCAAUGCAGAGGCUUACGGCA-UUUUCCUGGCUUUUGCAUGGGCUGUCAGAACACCUG ------...(((.....(((....)))((((.((.(((((((((((...((..-....)).)))))))))))..)))))).)))...... ( -26.70, z-score = -2.34, R) >droAna3.scaffold_13266 17812719 76 + 19884421 AAAAGUGUAUUCGAAUUUGCAACUGCAGACACGCAAUGCGAGGGCUUAAGGC--UUCUGCCAA------------CAGCCCGAACACCUG .....((((((((..(((((....)))))..)).)))))).(((((...(((--....)))..------------.)))))......... ( -24.50, z-score = -2.53, R) >consensus ______CUAUUUGAAUUUGCAACUGCAGACACGCAAUGCAGAGGCUUACGGAA_UUUUCCCGACUUUUGCAUGGGCUGUCAGAACACCUG .................(((....)))((((.((.(((((((((....(((........))).)))))))))..)))))).......... (-13.06 = -15.12 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:36 2011