| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,189,353 – 15,189,447 |
| Length | 94 |
| Max. P | 0.994941 |
| Location | 15,189,353 – 15,189,447 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 75.18 |
| Shannon entropy | 0.47515 |
| G+C content | 0.43699 |
| Mean single sequence MFE | -24.43 |
| Consensus MFE | -13.93 |
| Energy contribution | -15.95 |
| Covariance contribution | 2.02 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.75 |
| SVM RNA-class probability | 0.994941 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15189353 94 + 21146708 UUGUUUUCGCCGCAAGUCGUUCAAGUUCAGGGCGAUUCGUGUGGGUGGUUGGUAAAACCA--GAGAAGAAACAAAGAAAAAGAGAAGAAAGCGAAC ((((((((.(((((.(((((((.......)))))))...))))).(((((.....)))))--........................)))))))).. ( -26.50, z-score = -2.82, R) >droSim1.chr2R 13899786 93 + 19596830 UUGUUUUCGCCGCGAGUCGUUCAAGUUCAGGGCGAUUCGUGUGGGUGGUUGGUAAAACCA--GAGA-GAAACAAAGGAAAAGAGAAGAAAGCGAAC ((((((((.(((((((((((((.......)))))))))))).)..(((((.....)))))--....-...................)))))))).. ( -29.00, z-score = -3.32, R) >droSec1.super_1 12703130 93 + 14215200 UUGUUUUCGCCGCGAGUCGUUCAAGUUCAGGGCGAUUCGUGUGGGUGGUUGGUAAAACCA--GAGA-GAAACAAAGGAAAAGAGAAGAAAGCGAAC ((((((((.(((((((((((((.......)))))))))))).)..(((((.....)))))--....-...................)))))))).. ( -29.00, z-score = -3.32, R) >droYak2.chr2R 7151242 91 - 21139217 UUGUUUUCGCCGCGAGUCGUUCAAGUUCACGGCGGUUUAUGUGGGUGG----UAAUACCACAGAGA-GAAACAAAGGAAAAGAGAAGAAGGCGGCC .(((((((((((.(((.(......)))).)))).((((......((((----.....)))).....-.))))..............)))))))... ( -24.50, z-score = -1.26, R) >droEre2.scaffold_4845 9387514 89 + 22589142 UUGUUUUCAACGCGAGUCGUUCAAGUUCAGGGCGAUUUGUGUGGGUGG----UAACACCA--GUGA-GAAACAAAGGAAAAGAGAAGAAAGCGGCC .(((((((.(((((((((((((.......))))))))))))).((((.----...)))).--....-...................)))))))... ( -28.80, z-score = -3.53, R) >droWil1.scaffold_180569 859720 80 + 1405142 ---UUAUUUUUCUGGGGCGUUCAAGUUCAGGGCAAAUACAGAAAAGAA--AAUAAUAACA---ACAUUAAAUAAACGAAAUUUUUAUA-------- ---...((((((((....((((.......)))).....))))))))..--..........---.........................-------- ( -8.80, z-score = -1.27, R) >consensus UUGUUUUCGCCGCGAGUCGUUCAAGUUCAGGGCGAUUCGUGUGGGUGG__GGUAAAACCA__GAGA_GAAACAAAGGAAAAGAGAAGAAAGCGAAC ((((((((..((((((((((((.......))))))))))))..(((..........)))...........................)))))))).. (-13.93 = -15.95 + 2.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:36 2011