| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,165,432 – 15,165,531 |
| Length | 99 |
| Max. P | 0.813930 |
| Location | 15,165,432 – 15,165,531 |
|---|---|
| Length | 99 |
| Sequences | 10 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 77.31 |
| Shannon entropy | 0.43067 |
| G+C content | 0.64316 |
| Mean single sequence MFE | -32.89 |
| Consensus MFE | -21.49 |
| Energy contribution | -21.03 |
| Covariance contribution | -0.46 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.813930 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15165432 99 + 21146708 CCGACGCUGCUGAGCGCCGCCUUCACCAGUCUGAACGGUGUGUACAACAACAGCAGCAAUAGCAGCGAUCCCGCUCCGGACGAGGAGCCC---GACCAGCCA--------- .((.((((((((.((((((((((((......)))).))))(((......))))).))..)))))))).....(((((......))))).)---)........--------- ( -32.90, z-score = -1.00, R) >droSim1.chr2R 13875774 99 + 19596830 CCGACGCUGCUGAGCGCCGCCUUCACCAGUCUGAACGGUGUGUACAACAACAGCAGCAAUAGCAGCGAUCCCGCUCCGGACGAGGAGCCC---GACCAGCCA--------- .((.((((((((.((((((((((((......)))).))))(((......))))).))..)))))))).....(((((......))))).)---)........--------- ( -32.90, z-score = -1.00, R) >droSec1.super_323 6074 99 - 14858 CCGACGCUGCUGAGCGCCGCCUUCACCAGUCUGAACGGUGUAUACAACAAUAGCAGCAAUAGCAGCGAACCCGCUCCGGACGAGGAGCCC---GACCAGCCA--------- .((.((((((((.((((((((((((......)))).))))(((......))))).))..)))))))).....(((((......))))).)---)........--------- ( -31.00, z-score = -1.35, R) >droYak2.chr2R 7125902 99 - 21139217 CCGACGCUGCUGAGCGCCGCCUUCACCAGUCUGAACGGUGUAUACAACAACAGCAGCAACAGCAGCGAUCCCGCUCCGGACGAGGAGCCC---GACCAGCCA--------- .((.((((((((.((((((((((((......)))).))))............)).))..)))))))).....(((((......))))).)---)........--------- ( -32.40, z-score = -1.32, R) >droEre2.scaffold_4845 9369187 99 + 22589142 CCGACGCUGCUGAGCGCCGCCUUCACCAGUCUGAACGGUGUGUACAACAACAGCAGCAAUAGCAGCGAUCCCGCUCCGGACGAGGAGCCC---GACCAGCCA--------- .((.((((((((.((((((((((((......)))).))))(((......))))).))..)))))))).....(((((......))))).)---)........--------- ( -32.90, z-score = -1.00, R) >dp4.chr3 9992422 90 + 19779522 CCAACGCUGCUGAGUGCCGCGUUCACCAGCCUGAACAGCGUCUACCACAGCAGCAGCGACA---------CCGCUCCCGACGAGGAGCCG---GAGCAGCCG--------- .....(((((((.(((.((((((((......))))).)))..)))..))))))).((..(.---------(((((((......)))).))---).)..))..--------- ( -35.50, z-score = -2.31, R) >droPer1.super_4 5310686 90 + 7162766 CCAACGCUGCUGAGUGCCGCGUUCACCAGCCUGAACAGCGUCUACCACAGCAGCAGCGACA---------CCGCUCCCGACGAGGAGCCG---GAGCAGCCG--------- .....(((((((.(((.((((((((......))))).)))..)))..))))))).((..(.---------(((((((......)))).))---).)..))..--------- ( -35.50, z-score = -2.31, R) >droWil1.scaffold_180697 1219543 95 - 4168966 CCAACGCUGCUGAGUGCCGCGUUCACAAGUUUGAAUAGCGUCUAUCACAGCAGCAGCGAUA---------CAGCUCCGGACGAGGAGUCCUCCGAUCAUUCACA------- ....((((((((.(((.((((((((......))))).))).....)))..))))))))...---------..(((((......)))))................------- ( -29.40, z-score = -1.48, R) >droMoj3.scaffold_6496 12897592 96 - 26866924 CCCACACUGCUGAGCGCCGCGUUCACCAGCCUGAACAGCGCCUACCACAGCAGCAGUGACA---------CCGCCCCGGACGAGGA---GCCGGAACCGCUAAGCCCA--- ....((((((((.((((...(((((......))))).)))).........))))))))...---------..((.((((.(.....---)))))....))........--- ( -29.00, z-score = -0.73, R) >droGri2.scaffold_15112 3646495 100 + 5172618 CCGACGCUGCUGAGCGCCGCGUUCACCUCACUGAACAGCGCCUACCACAGCAGCAGCGACA---------CCGCUCCCGACGAGGACACGCCAGAGCCG--GAGCACGGCU (((.((((((((.((((...(((((......))))).)))).........))))))))...---------..(((((.(....((.....))....).)--)))).))).. ( -37.40, z-score = -1.78, R) >consensus CCGACGCUGCUGAGCGCCGCCUUCACCAGUCUGAACAGCGUCUACAACAACAGCAGCAACA_________CCGCUCCGGACGAGGAGCCC___GACCAGCCA_________ .....(((((((.((((....((((......))))..)))).........)))))))...............(((((......)))))....................... (-21.49 = -21.03 + -0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:35 2011