| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,157,852 – 15,157,953 |
| Length | 101 |
| Max. P | 0.697261 |
| Location | 15,157,852 – 15,157,953 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 70.14 |
| Shannon entropy | 0.51793 |
| G+C content | 0.38191 |
| Mean single sequence MFE | -18.92 |
| Consensus MFE | -8.98 |
| Energy contribution | -9.66 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.697261 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15157852 101 - 21146708 ACAACGAAAAAAAUAGUAUGAAAAAAGGGCAAUACAACUGAUUCUCGGAAGUGUUUCAGUAUUCACAAGCAUUCGGAUGGGCACAUAUAACCGUGUAUCUG-------- .....(((.......((((............)))).(((((..(.(....).)..))))).))).........((((((.((..........)).))))))-------- ( -17.70, z-score = -0.39, R) >droSec1.super_1 12672486 99 - 14215200 ACAAC-AAAAAAAUAGUAUA-AAAAAGGGCAAUACAACUGAUUCUCGGAAGUGUUUCAGUAUUCACAAGCAUUCGGAUGGGCACAUAUAUCCGUGUAUCUU-------- .....-..............-..........((((((((((..(.(....).)..))))).............((((((........)))))))))))...-------- ( -17.90, z-score = -1.38, R) >droYak2.chr2R 7118427 98 + 21139217 ACAAC--AAAAAAUAGUGUA-AAAAAGGGCAAUACAACUGAUUCUCGGAAGUGUUUCAGCAUUCACAAGCCUACGGAUGGGCACAUCCAUCCGCGUAUCUU-------- ...((--.............-.....((((.......((((..(.(....).)..)))).........)))).((((((((....)))))))).)).....-------- ( -23.39, z-score = -2.12, R) >droEre2.scaffold_4845 9361735 107 - 22589142 ACAAC--AAAAAAUAGUAUACAAAAAGGGCAGUACAACUGAUUCUCGGAAGUGUUUCAGUAUUCACAAGCCUUCGGAUGGGCACAUAUAUCCGCGUAUCUCAGUAUCUC .....--.......((.((((....(((((.((...(((((..(.(....).)..)))))....))..)))))((((((........)))))).))))))......... ( -22.20, z-score = -1.79, R) >droWil1.scaffold_180697 1210873 89 + 4168966 AAAACCAAAAAAAAAAC----AACCACAACCAGAGAACUCAAUCCCUGGAGAGCUGGAG-AGACGAGAUUAUAUGCUCAAAUACAUAAGUUUUA--------------- ............(((((----........((((.((......)).)))).((((.....-..............))))..........))))).--------------- ( -13.41, z-score = -1.91, R) >consensus ACAAC_AAAAAAAUAGUAUA_AAAAAGGGCAAUACAACUGAUUCUCGGAAGUGUUUCAGUAUUCACAAGCAUUCGGAUGGGCACAUAUAUCCGCGUAUCUU________ ....................................(((((..(.(....).)..))))).............((((((........))))))................ ( -8.98 = -9.66 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:32 2011