| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,155,344 – 15,155,434 |
| Length | 90 |
| Max. P | 0.633644 |
| Location | 15,155,344 – 15,155,434 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 78.79 |
| Shannon entropy | 0.42318 |
| G+C content | 0.46714 |
| Mean single sequence MFE | -17.49 |
| Consensus MFE | -9.29 |
| Energy contribution | -9.80 |
| Covariance contribution | 0.51 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.633644 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15155344 90 - 21146708 CAAUUGAUGCAACCUGCUGAACACACGAUCAGCUGCGAUUGCAACU--GCGAU--CCUGACUUGCAACAUGUUCCCUUUUUCACCGAUUUUCCU- ....((.(((((...(((((.(....).)))))...((((((....--)))))--).....))))).)).........................- ( -18.20, z-score = -2.16, R) >droSim1.chr2R 13866353 90 - 19596830 CAUUUGAAGCAACCUGCUGAACACACGAUCAGCUGCGAUUGCAACU--GCGAU--CCUGACUUGCAACAUGUUCCCUUUUUCACCGAUUUUCCU- ........((((...(((((.(....).)))))...((((((....--)))))--).....)))).............................- ( -16.70, z-score = -1.41, R) >droSec1.super_1 12669971 90 - 14215200 CAUUUGAUGCAACCUGCUUAACACACGAUCAGCUGCGAUUGCAACU--GCGAU--CCUGACUUGCAACAUGUUCCCUUUUUCACCGAUUUUCCU- ....((.(((((...(((............)))...((((((....--)))))--).....))))).)).........................- ( -12.30, z-score = -0.18, R) >droYak2.chr2R 7115725 91 + 21139217 CAAUCGCUGCAACCUGCUGAACACACGAUCAGCUGCGAUUGCAACU--GCGAU--CCUGACUUGCAACAUGUUCCCUUUUUUCAACGAUUUUCCU .(((((.(((((...(((((.(....).)))))...((((((....--)))))--).....)))))...((...........)).)))))..... ( -17.90, z-score = -1.63, R) >droEre2.scaffold_4845 9359025 90 - 22589142 CAAUCGAUGCAACCUGCUGAACACACGAUCAGCUGCGAUUGCAACU--GCGAU--CCUGACUUGCAACAUGUUCCCUUUUUCACCGAUUUUCCU- .(((((.(((((...(((((.(....).)))))...((((((....--)))))--).....)))))...((..........)).))))).....- ( -18.40, z-score = -2.08, R) >droAna3.scaffold_13266 8473870 82 + 19884421 CAAUCGAUGCAACCUGCUG--CACACGAUCAGCUGCGAUUGCAACUGCGCGAUUGCCUGACUUGCAACAUGUUCCCUUUUCUUC----------- .....(.(((((...((((--........)))).((((((((......)))))))).....))))).)................----------- ( -18.80, z-score = -1.03, R) >droWil1.scaffold_180697 1206103 86 + 4168966 UAUUGUCUGCAACCUGCUG--UAAUUCAGCUGUUGCUGUUGCACCC--UCUGCACACUGACUUGCAACAUGUUCUUAUUUACCUUUUUCU----- ........(((((..((((--.....)))).)))))(((((((...--((........))..))))))).....................----- ( -20.10, z-score = -3.19, R) >consensus CAAUCGAUGCAACCUGCUGAACACACGAUCAGCUGCGAUUGCAACU__GCGAU__CCUGACUUGCAACAUGUUCCCUUUUUCACCGAUUUUCCU_ .......(((((...(((((........)))))....(((((......)))))........)))))............................. ( -9.29 = -9.80 + 0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:29 2011