Locus 4711

Sequence ID dm3.chr2R
Location 15,153,375 – 15,153,472
Length 97
Max. P 0.820915
window6464 window6465

overview

Window 4

Location 15,153,375 – 15,153,472
Length 97
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 95.50
Shannon entropy 0.08021
G+C content 0.44769
Mean single sequence MFE -25.28
Consensus MFE -23.70
Energy contribution -23.26
Covariance contribution -0.44
Combinations/Pair 1.13
Mean z-score -1.09
Structure conservation index 0.94
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.01
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>dm3.chr2R 15153375 97 + 21146708
CAUUUGAAUUCCGAAUGCCACGAUCGUAGCCAAAAUCGUGAUGUGGCUUCAGUUUUGUUGGCGUAGGGCCGCCGAUCCCAAAAAUGAAAAACAAAAA--
..((((..........(((((.((((..(......)..)))))))))((((.(((((((((((......))))))...))))).))))...))))..-- ( -24.30, z-score =  -0.89, R)
>droSim1.chr2R 13864348 97 + 19596830
CAUUUGAAUUCCGAAUGCCACGAUCGUAGCCAAAAUCGUGAUGUGGCUUCAGUUUUGUUGGCGUAGGGCCGCCGAUCCCAAAAAUGAAAAACAAAAA--
..((((..........(((((.((((..(......)..)))))))))((((.(((((((((((......))))))...))))).))))...))))..-- ( -24.30, z-score =  -0.89, R)
>droSec1.super_1 12667996 97 + 14215200
CAUUUAAAUUUCGAAUGCCACGAUCGUAGCCAAAAUCGUGAUGUGGCUUCAGUUUUGUUGGCGUAGGGCCGCCGAUCCCAAAAAUGAAAAACAAAAA--
........(((((((.(((((.((((..(......)..))))))))))))..(((((((((((......))))))...)))))..))))........-- ( -23.50, z-score =  -0.93, R)
>droYak2.chr2R 7113689 99 - 21139217
CAUUUGAAUUCCAAAUGCCACGAUCGUAGCCAAAAUCGUGAUGUGGCUUCAGUUUUGUUGGCGUAGGGCCGCCGAUCCCAAAAAUGAAAAACAAAAAGA
..((((..........(((((.((((..(......)..)))))))))((((.(((((((((((......))))))...))))).))))...)))).... ( -24.30, z-score =  -1.02, R)
>droEre2.scaffold_4845 9356979 97 + 22589142
CAUUUGAAUUCCGAGUGCCACGAUCGUAGCCAAAAUCGUGAUGUGGCUUCAGUUUUGUUGGCGUAGGGCCGCCGAUGCCGAAGCUGAAAAACAAAAG--
..((((..........(((((.((((..(......)..)))))))))((((((((((((((((......))))))...))))))))))...))))..-- ( -30.00, z-score =  -1.70, R)
>consensus
CAUUUGAAUUCCGAAUGCCACGAUCGUAGCCAAAAUCGUGAUGUGGCUUCAGUUUUGUUGGCGUAGGGCCGCCGAUCCCAAAAAUGAAAAACAAAAA__
.(((((.....)))))(((((.((((..(......)..)))))))))((((.(((((((((((......))))))...))))).))))........... (-23.70 = -23.26 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 15,153,375 – 15,153,472
Length 97
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 95.50
Shannon entropy 0.08021
G+C content 0.44769
Mean single sequence MFE -26.18
Consensus MFE -23.18
Energy contribution -23.82
Covariance contribution 0.64
Combinations/Pair 1.03
Mean z-score -1.88
Structure conservation index 0.89
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.80
SVM RNA-class probability 0.820915
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 15153375 97 - 21146708
--UUUUUGUUUUUCAUUUUUGGGAUCGGCGGCCCUACGCCAACAAAACUGAAGCCACAUCACGAUUUUGGCUACGAUCGUGGCAUUCGGAAUUCAAAUG
--.((((((((..((....))..)..((((......)))))))))))(((((((((((((..............))).))))).))))).......... ( -27.04, z-score =  -2.08, R)
>droSim1.chr2R 13864348 97 - 19596830
--UUUUUGUUUUUCAUUUUUGGGAUCGGCGGCCCUACGCCAACAAAACUGAAGCCACAUCACGAUUUUGGCUACGAUCGUGGCAUUCGGAAUUCAAAUG
--.((((((((..((....))..)..((((......)))))))))))(((((((((((((..............))).))))).))))).......... ( -27.04, z-score =  -2.08, R)
>droSec1.super_1 12667996 97 - 14215200
--UUUUUGUUUUUCAUUUUUGGGAUCGGCGGCCCUACGCCAACAAAACUGAAGCCACAUCACGAUUUUGGCUACGAUCGUGGCAUUCGAAAUUUAAAUG
--.((((((((..((....))..)..((((......))))))))))).((((((((((((..............))).))))).))))........... ( -23.74, z-score =  -1.41, R)
>droYak2.chr2R 7113689 99 + 21139217
UCUUUUUGUUUUUCAUUUUUGGGAUCGGCGGCCCUACGCCAACAAAACUGAAGCCACAUCACGAUUUUGGCUACGAUCGUGGCAUUUGGAAUUCAAAUG
...((((((((..((....))..)..((((......))))))))))).((((.(((..((((((((........))))))))....)))..)))).... ( -24.70, z-score =  -1.36, R)
>droEre2.scaffold_4845 9356979 97 - 22589142
--CUUUUGUUUUUCAGCUUCGGCAUCGGCGGCCCUACGCCAACAAAACUGAAGCCACAUCACGAUUUUGGCUACGAUCGUGGCACUCGGAAUUCAAAUG
--..((((..((((.(((((((....((((......)))).......)))))))....((((((((........)))))))).....))))..)))).. ( -28.40, z-score =  -2.45, R)
>consensus
__UUUUUGUUUUUCAUUUUUGGGAUCGGCGGCCCUACGCCAACAAAACUGAAGCCACAUCACGAUUUUGGCUACGAUCGUGGCAUUCGGAAUUCAAAUG
...((((((((((((....)))))..((((......)))))))))))(((((((((((((..............))).))))).))))).......... (-23.18 = -23.82 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:28 2011