Locus 4710

Sequence ID dm3.chr2R
Location 15,146,554 – 15,146,622
Length 68
Max. P 0.751655
window6463

overview

Window 3

Location 15,146,554 – 15,146,622
Length 68
Sequences 5
Columns 68
Reading direction reverse
Mean pairwise identity 89.48
Shannon entropy 0.18307
G+C content 0.61577
Mean single sequence MFE -21.74
Consensus MFE -17.54
Energy contribution -18.42
Covariance contribution 0.88
Combinations/Pair 1.07
Mean z-score -1.83
Structure conservation index 0.81
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.58
SVM RNA-class probability 0.751655
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 15146554 68 - 21146708
GAAGGACUCCGCAACCAUUUGCGAACCACCGCGGUGGGACAGGCCCACUACGGAAAUAGACACGGGGC
......((((((((....))))......(((..(((((.....)))))..)))..........)))). ( -23.70, z-score =  -2.13, R)
>droSim1.chr2R 13857539 58 - 19596830
----GACUUCGCUUCCAUCUGCGAACCACCGCGGUGGGACAGGCCCACUACGGAAAUAGACA------
----...(((((........)))))...(((..(((((.....)))))..))).........------ ( -21.10, z-score =  -3.12, R)
>droSec1.super_1 12661223 64 - 14215200
----GACUUCGCUUCCAUCUGCGAACCACCGCGGUGGGACAGGCCCACUUCGAAAAUAGACAAGGGGC
----......(.(((((.(((((......)))))))))))..((((.((((.......))..)))))) ( -18.90, z-score =  -0.70, R)
>droEre2.scaffold_4845 9350255 64 - 22589142
----GACUCCGCUUCCAUCUGCGAACCACCGCGGUGGGACAGGCCCACUACGGAAAUAGACACGGGGC
----..((((((........))......(((..(((((.....)))))..)))..........)))). ( -22.50, z-score =  -1.60, R)
>droYak2.chr2R 7106621 64 + 21139217
----GACUCCGCUUCCAUCUGCGAACCACCGCGGUGGGACAGGCCCACUACGGAAAUAGACACGGGGC
----..((((((........))......(((..(((((.....)))))..)))..........)))). ( -22.50, z-score =  -1.60, R)
>consensus
____GACUCCGCUUCCAUCUGCGAACCACCGCGGUGGGACAGGCCCACUACGGAAAUAGACACGGGGC
......((((((........))......(((..(((((.....)))))..)))..........)))). (-17.54 = -18.42 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:27 2011