| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,145,928 – 15,146,020 |
| Length | 92 |
| Max. P | 0.914294 |
| Location | 15,145,928 – 15,146,020 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 87.33 |
| Shannon entropy | 0.24408 |
| G+C content | 0.53975 |
| Mean single sequence MFE | -21.09 |
| Consensus MFE | -15.65 |
| Energy contribution | -16.85 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.914294 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15145928 92 - 21146708 AUAGACGAAAAUGUGCACUCGCAUGUCCCGUCGCCGAGUUAUCCUCUUU---UGUGUGUGCGUGUUUUCCCUGGGACCUUUUCCCCCGCCACCGC- ......(((((..(((((.((((.((......)).(((.....)))...---)))).)))))..)))))...((((.....))))..........- ( -23.20, z-score = -1.77, R) >droSim1.chr2R 13856857 91 - 19596830 AUAGACGAAAAUGUGCACUCGCAUGUCCCGUCGCCGAGUUAUCCUCUUU---UGUGUGUGCGUGUUUUCCCUGGGACCUUUUCCCCCGCCCCCU-- ......(((((..(((((.((((.((......)).(((.....)))...---)))).)))))..)))))...((((.....)))).........-- ( -23.20, z-score = -2.98, R) >droSec1.super_1 12660515 91 - 14215200 AUAGACGAAAAUGUGCACUCGCAUGUCCCGUCGCCGAGUUAUCCUCUUU---UGUGUGUGCGUGUUUUCCCUGGGACCUUUUCCCCCGCCCCCU-- ......(((((..(((((.((((.((......)).(((.....)))...---)))).)))))..)))))...((((.....)))).........-- ( -23.20, z-score = -2.98, R) >droYak2.chr2R 7105755 95 + 21139217 AUAGACGAAAAUGUGCACUCGCAUGUCCCGUCGCCGAGUUAUCCUCUUUGUGUGUGUGUGCGUGUUUUCCCUGCGACCUUUUCCCCCGCCCCCCU- ......(((((..(((((.(((((((......)).(((.....))).....))))).)))))..)))))...(((...........)))......- ( -21.80, z-score = -3.31, R) >droEre2.scaffold_4845 9349362 88 - 22589142 AUAGACGAAAAUGUGCACUCGCAUGU-CCGUCGCCGAGUUUUCCUC-UU---UGUGUGUGCGUGUUUUCCCUGGGACCUUUUCCCCCGCCCCU--- ......(((((..(((((.((((.((-.....)).(((.....)))-..---)))).)))))..)))))...((((.....))))........--- ( -23.00, z-score = -2.68, R) >droAna3.scaffold_13266 8464706 83 + 19884421 AUAGUCGAAAAUGUGCACUCGCAUGUCCCGUCCUCGAG--AUCCUUUU----UGUGU-------UUUUCUUUCUGACCUUUUCCCCGGCUCCUGGU ...(((((((....((((......(((.((....)).)--))......----.))))-------.....)))).))).......((((...)))). ( -12.12, z-score = 0.23, R) >consensus AUAGACGAAAAUGUGCACUCGCAUGUCCCGUCGCCGAGUUAUCCUCUUU___UGUGUGUGCGUGUUUUCCCUGGGACCUUUUCCCCCGCCCCCG__ ......(((((..(((((.((((.(......)...(((.....)))......)))).)))))..)))))...((((.....))))........... (-15.65 = -16.85 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:26 2011