| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,130,717 – 15,130,817 |
| Length | 100 |
| Max. P | 0.733000 |
| Location | 15,130,717 – 15,130,817 |
|---|---|
| Length | 100 |
| Sequences | 13 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 71.60 |
| Shannon entropy | 0.66053 |
| G+C content | 0.39619 |
| Mean single sequence MFE | -20.37 |
| Consensus MFE | -10.40 |
| Energy contribution | -10.72 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.10 |
| Mean z-score | -0.72 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.733000 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15130717 100 - 21146708 UUUGCUGCUGAAUUUCAAUCUUCUCGACUGUCAUGUCCGGAUUCAUGGCCGUCGCUUCCUG-UAAUCGCGUAAAAAACAAUUGGUAUCAGU-UAA-UGUAUCU ..(((.(((((...(((((......(((.((((((........)))))).)))((......-.....))..........)))))..)))))-...-.)))... ( -19.80, z-score = -1.06, R) >droSim1.chr2R 13839799 99 - 19596830 UUUGCUGCUGAAUUUCAAUCUUCUCGACUGUCAUGUCAGGAUUAAUGGCAAUUGCUU-CAGAAAAUUGAGUAAAAA---CCAAAAAUAUCAGUUAAAGUAUCU ..(((((((((.....((((((...(((......)))))))))..(((...(((((.-(((....))))))))...---)))......)))))...))))... ( -17.20, z-score = -0.49, R) >droSec1.super_1 12645284 99 - 14215200 UUUGCUGCUGAAUUUCAAUCUUCUCGACUGUCAUGUCCGGAUUCAUGGCCGUCGCUUCCUG-UAAUCGAGU-AAAAACCAUUGGUAUCAGU-UAA-UGUAUCU ..(((.(((((...(((((...((((((.((((((........)))))).)))((.....)-)....))).-.......)))))..)))))-...-.)))... ( -20.50, z-score = -1.09, R) >droYak2.chr2R 7091368 101 + 21139217 UUUGCUGUUGAAUUUCAAUCUUCUCGACUGUCAUGUCCGGAUUCAUGGCCGUCGCUUCCUA-AAAAUCGAUUAAGAACAUUGGUUAUCGUU-UAAGUGUAUCU ...(((..(((...(((((.((((((((.((((((........)))))).)))).......-...........)))).)))))...)))..-..)))...... ( -18.56, z-score = -0.32, R) >droEre2.scaffold_4845 9330163 98 - 22589142 UUUGCUGCUGAAUUUCAAUCUUCUCGACUGUCAUGUCCGGAUUCAUGGCCGUCGCUUCCUA-AAAUCGAA--GAGGGCAAUGGGUAUCGGU-UAA-AGUAUCU ..(((((((((..((((........(((.((((((........)))))).)))(((..((.-.......)--)..)))..))))..)))))-...-))))... ( -24.40, z-score = -0.59, R) >droAna3.scaffold_13266 8452469 102 + 19884421 UUUGCUGCUGAAUUUCAAUCUUUUCGACCGUCAUGUCCGGGUUCAUGGCUGUCGCUUCCUGGAAGUGAAAGA-AAAGGAUCAGAAAGGACUCAGAAUGUAGCU ...(((((.....(((..(((((((((((.((((.((((((.....(((....))).)))))).))))....-...)).)).)))))))....))).))))). ( -29.40, z-score = -0.94, R) >dp4.chr3 9964874 89 - 19779522 UUUGUUGUUGAAUUUCAAUUUUCUCGACUGUCAUGUCCGGAUUCAUGGCCGUCGCUUCCUGCAAAACAAAAGUACGUCAUUGGAUAUCC-------------- ((((((((((.....))))......(((.((((((........)))))).)))((.....))..)))))).....(((....)))....-------------- ( -16.80, z-score = -0.10, R) >droPer1.super_4 5283099 89 - 7162766 UUUGUUGUUGAAUUUCAAUCUUCUCGACUGUCAUGUCCGGAUUCAUGGCCGUCGCUUCCUGCAAAACAAAAGUACGUCAUUAGAUAUCC-------------- ((((((((((.....))))......(((.((((((........)))))).)))((.....))..)))))).....(((....)))....-------------- ( -16.90, z-score = -0.72, R) >droWil1.scaffold_180697 1172067 99 + 4168966 UUUGCUGUUGAAUUUCAAUCUUCUCGACUGUCAUGUCUGGAUUCAUGGCCGUCGCUUCCUGCAA----AAGUUUAUAGAAUAAAUAUAUUAGUAAGUUUUUCU (((((((.((.((((...(((....(((.((((((........)))))).)))((.....))..----........)))..)))).)).)))))))....... ( -17.90, z-score = -0.93, R) >droVir3.scaffold_13324 2768352 91 - 2960039 UUUGCUGUUGAAUUUCAAUCUUCUCGACUGUCAUGUCUGGAUUCAUAGCCGUCGCUUCCUGCAA---AAAUA-AAU---UU-GAAAACAGUUUGAAUAC---- ...((((((....(((((.......(((.(..(((........)))..).)))((.....))..---.....-...---))-)))))))))........---- ( -15.10, z-score = -0.38, R) >droMoj3.scaffold_6496 12856866 99 + 26866924 UUUGCUGUUGAAUUUCAAUCUUCUCGACUGUCAUGUCUGGAUUCAUGGCCGUCGCCUCCUGCGAAUAGAGGAUGAUGGGGUAGAUACAUAUAUUAAAAU---- ..((.((((..((..((.((((((((((.((((((........)))))).)))((.....)).....))))).))))..)).))))))...........---- ( -23.60, z-score = -0.21, R) >droGri2.scaffold_15112 3607684 98 - 5172618 UCUGCUGUUGUAUUUCAAUCUUCUCGACUGUCAUGUCCGGAUUCAUGGCUGUCGCUUCCUGCAAA-CAAGCA-AAUAGAUC-GAAAUCAUUAUAGAUAUAU-- ((((.((.((.(((((.((((...((((.((((((........)))))).)))).....(((...-...)))-...)))).-))))))).)))))).....-- ( -22.50, z-score = -1.68, R) >anoGam1.chr3L 37835122 98 - 41284009 UUUGCUGUUGAAUUUCAAUCUUCUCCACUGUCAUAUCUGGAUUCAUGGCGGUUGCUUCCUGUAAAAUGGG--AAAU---GCGAGAAAGGCAAUUAAUACAUUU .(((((((((.....)))).(((((.((((((((..........)))))))).(((((((((...)))))--))..---))))))).)))))........... ( -22.10, z-score = -0.81, R) >consensus UUUGCUGUUGAAUUUCAAUCUUCUCGACUGUCAUGUCCGGAUUCAUGGCCGUCGCUUCCUGCAAAUCGAAUAAAAAACAUUAGAUAUCAGU_UAAAUGUAUCU ........................((((.((((((........)))))).))))................................................. (-10.40 = -10.72 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:25 2011