| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,123,940 – 15,124,042 |
| Length | 102 |
| Max. P | 0.868227 |
| Location | 15,123,940 – 15,124,042 |
|---|---|
| Length | 102 |
| Sequences | 12 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 64.96 |
| Shannon entropy | 0.75136 |
| G+C content | 0.41475 |
| Mean single sequence MFE | -24.92 |
| Consensus MFE | -12.95 |
| Energy contribution | -12.93 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.13 |
| Mean z-score | -0.56 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.868227 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15123940 102 - 21146708 GCUUGUAGGAGAUCUUCAGAAUCUUGGGCCAGGCAAAGCGGUUGAUGCGCAAUCUAGUU-GGAU---AGUGGUUUAAAUAUAUUAGCAAUUGUU--UAAUUUAAAUAU--- ((((((..((((((....).)))))..).))))).(((((((((...(((.((((....-))))---.)))..((((.....))))))))))))--)...........--- ( -19.10, z-score = 0.69, R) >droSim1.chr2R 13833206 96 - 19596830 GCUUGUAGGAGAUCUUCAGGAUCUUGGGCCAGGCAAAGCGGUUUAUGCGCAAUCUAGUU-GGAU---------UUUGAUUUAUUAAUAAUUGUU--UAAUUCAAAUAU--- ((((((..((((((.....))))))..).)))))...(((.......))).......((-((((---------(.(((((.......)))))..--.)))))))....--- ( -19.70, z-score = -0.25, R) >droSec1.super_1 12638530 102 - 14215200 GCUUGUAGGAGAUCUUCAGGAUCUUGGGCCAGGCAAAGCGGUUGAUGCGCAAUCUAGUU-GGAU---AGUGGGUUUAAUGUACUAGCAAUUGUU--UAAUUUAAAUAU--- ((((((..((((((.....))))))..).))))).(((((((((...(((.((((....-))))---.)))(((.......)))..))))))))--)...........--- ( -25.10, z-score = -0.68, R) >droYak2.chr2R 7084581 102 + 21139217 GCUUGUAGGAGAUCUUCAGGAUCUUGGGCCAGGCAAAGCGGUUGAUGCGCAAUCUAGUU-GGGU---CAUGGACAUCAUUUAUUAAUAAUUGUU--GAAUUGAAAUAU--- ((((((..((((((.....))))))..).)))))......(((.((((.((((...)))-).).---))).))).(((....(((((....)))--))..))).....--- ( -22.20, z-score = 0.30, R) >droEre2.scaffold_4845 9323367 102 - 22589142 GCUUGUAGGAGAUCUUCAGGAUCUUGGGCCAGGCAAAGCGGUUGAUGCGCAAUCUAUUU-GGGU---AAUUUAUAAAUCAUUUAUAUAAUUGUU--UAAUGUAAAUAG--- ((((((..((((((.....))))))..).))))).(((((((((.(((.(((.....))-).))---)...(((((.....)))))))))))))--)...........--- ( -22.60, z-score = -1.00, R) >droAna3.scaffold_13266 8445663 91 + 19884421 GCUUGUACGAGAUCUUCAGGAUCUUGGGCCAGGCAAAACGGUUGAUGCGUAGUCUGCAAGAAAG------GG----UGUUAGUGUCUGGGGUUUUGGGCUU---------- ((((...(((((((.....)))))))..(((((((.((((.((..((((.....)))).....)------).----))))..)))))))......))))..---------- ( -26.70, z-score = -0.72, R) >dp4.chr3 9958034 101 - 19779522 GCUUGUACGAGAUCUUCAAGAUCUUGGGCCAAGCGAAGCGGUUGAUGCGCAGUCUGCAAGCGAA------AGAGACGACGAAUUAGCGAAAUGUUGGGCUUCAGUUU---- (((((..(((((((.....)))))))...)))))(((((.((((((.((..((((.....(...------.)))))..)).))))))((....))..))))).....---- ( -31.90, z-score = -0.83, R) >droPer1.super_4 5276271 101 - 7162766 GCUUGUACGAGAUCUUCAAGAUCUUGGGCCAAGCAAAGCGGUUGAUGCGCAGUCUGCAAGCGAA------AGAGACGACGCAUUAGCGAAUUGUUGGGCUUUAGUUU---- .......(((((((.....)))))))((((.(((((..((.((((((((..((((.....(...------.)))))..))))))))))..))))).)))).......---- ( -36.90, z-score = -2.49, R) >droWil1.scaffold_180697 1164121 107 + 4168966 GCUUAUACGAGAUCUUUAAGAUCUUUGGCCAAGCGAAACGAUUGAUGCGUAAUCUGUUCACGAA---CAUUUACAAGAAUUAGUAUCAAAUGCAA-GAAAAUUGAAAUUAU ((((...(((((((.....)))).)))...))))....(((((..(((((((..((((....))---)).))))..((.......))....))).-...)))))....... ( -17.80, z-score = -0.21, R) >droVir3.scaffold_13324 2761487 95 - 2960039 GCUUGUACGAGAUCUUCAAGAUCUUGGGCCAAGCGAAACGGUUAAUGCGCAAUCUUCAAGAAAU------GGUUGUUGCUUUUAUUUAAAUCGAUGGAAAU---------- (((((..(((((((.....)))))))...)))))....(((((((((.(((((..(((.....)------))..)))))...))))..)))))........---------- ( -24.10, z-score = -1.44, R) >droMoj3.scaffold_6496 12849903 100 + 26866924 GCUUGUACGAGAUCUUCAAGAUCUUUGGCCAAGCGAAACGGUUUAUGCGCAGCCUGUU--GGAA---UAUA---AAGCUUUAGUCUGAGGUCAAAUGAAUAUGGAAAU--- (((((..(((((((.....)))).)))..)))))......((((((.....(((..(.--.((.---((..---......)).))..))))...))))))........--- ( -20.20, z-score = 0.69, R) >anoGam1.chr3L 37825330 110 - 41284009 GCUUGUACGAGAUCUUCAGGAUCUUCGGCCAGGCGAACCGAUUGAUACGAAGUCUGCAAACGAAGUCGGCAAAGGUGCACGAUUAGCAAUUGAGUGUGAUGGCGAAUCAU- (((((..(((((((.....)))).)))..)))))........((((.((..(((.(((..(((((((((((....))).))))).....)))..))))))..)).)))).- ( -32.70, z-score = -0.81, R) >consensus GCUUGUACGAGAUCUUCAGGAUCUUGGGCCAGGCAAAGCGGUUGAUGCGCAAUCUGCUA_GGAU_____UGGAUAUGAUUUAUUAGCAAUUGUU__GAAUUUAAAUAU___ ((((((..((((((.....))))))..).)))))...(((.......)))............................................................. (-12.95 = -12.93 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:24 2011