| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,120,000 – 15,120,104 |
| Length | 104 |
| Max. P | 0.668614 |
| Location | 15,120,000 – 15,120,104 |
|---|---|
| Length | 104 |
| Sequences | 7 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 75.15 |
| Shannon entropy | 0.44692 |
| G+C content | 0.56415 |
| Mean single sequence MFE | -36.06 |
| Consensus MFE | -21.69 |
| Energy contribution | -23.30 |
| Covariance contribution | 1.62 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.668614 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15120000 104 + 21146708 GGAACGGAUCUGGCUUAUCGACUGACGGGUUCCAUAGAGUCGCCAUCCUCGACUGCC-------AGGCGGUUCCACUCCGUCGAUAAGUCUAUGGAUUCGCAAGAGCGAAA (((((.(.((((((...((((..((.((((((....))).).)).)).))))..)))-------)))).)))))..(((((.((....)).)))))(((((....))))). ( -36.70, z-score = -1.31, R) >droSim1.chr2R 13829324 104 + 19596830 GGAACGGAUCUGGCUUAUCGACUGGCGGGUUCCAUGGAGUCGCCAUCCUCGACUGCC-------AGGCGGUUCCACUCCGUCGAUAAGUGUAUGGAUUCGCAAAGGCGCAA (((((.(.((((((...((((.((((((.((.....)).))))))...))))..)))-------)))).)))))..(((((((.....)).)))))..(((....)))... ( -39.80, z-score = -1.35, R) >droSec1.super_1 12634635 104 + 14215200 GGAACGGAUCUGGCUUAUCGACUGGCGGGUUCCAUGGAGUCGCCAUCCUCGACUGCC-------AGGCGGUUCCACUCCGUCGAUAAGUGCAUGGAUUCGCAAAGGCGCAA (((((.(.((((((...((((.((((((.((.....)).))))))...))))..)))-------)))).)))))....((((......(((........)))..))))... ( -40.00, z-score = -1.25, R) >droYak2.chr2R 7080504 104 - 21139217 GGAACGGAUCUGGCUUAUCGACUGGCGGGUUCCAUGAAGUCGCCAUCCUCCAUUGCC-------AGGCGGUUCCACUCCGUCGAUAAGUCUAUGGAUUCGCAAAGGCGAUA (((((.(.((((((.....((.((((((.(((...))).)))))))).......)))-------)))).)))))..(((((.((....)).))))).((((....)))).. ( -39.70, z-score = -2.08, R) >droEre2.scaffold_4845 9319575 87 + 22589142 GGAACGGAUCUGGCUUAUCGACUGGC-----------------CUUCCUCGACUGCC-------AGGCGGUUCCACUCCGUCGAUAAGUCUAUGGAUUCGCACAGGCGAAA (((((.(.((((((...((((..((.-----------------...))))))..)))-------)))).)))))..(((((.((....)).)))))(((((....))))). ( -33.30, z-score = -2.38, R) >droPer1.super_4 5272189 103 + 7162766 GGAACGGAUCUGGCUUAUCGGGUCGC--------CUGAGUCGCCUUCCUGCACGGCUCACACAAAUGCAGUUCCGCUCUGCCGAUAAGUCACCGAGUUUCCCAAGACAGAA (((((((...((((((((((....(.--------.(((((((..........)))))))..)....((((.......)))))))))))))))))...)))).......... ( -31.00, z-score = -0.44, R) >dp4.chr3 9953955 103 + 19779522 GGAACGGAUCUGGCUUAUCGGGGCGC--------CUGAGUCGCCUUCCUGCACGGCUCACACAAAUGCAGUUCCGUUCUGCCGAUAAGUCACCGAGUUUCCCAAGACAGAA (((((((...((((((((((((((((--------....).))))...(((((..(......)...)))))..........))))))))))))))...)))).......... ( -31.90, z-score = -0.42, R) >consensus GGAACGGAUCUGGCUUAUCGACUGGCGGGUUCCAUGGAGUCGCCAUCCUCGACUGCC_______AGGCGGUUCCACUCCGUCGAUAAGUCUAUGGAUUCGCAAAGGCGAAA ....((((((((((((((((((((((...............))))......((((((........))))))........)))))))))))...)))))))........... (-21.69 = -23.30 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:22 2011