| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,119,875 – 15,119,971 |
| Length | 96 |
| Max. P | 0.755742 |
| Location | 15,119,875 – 15,119,971 |
|---|---|
| Length | 96 |
| Sequences | 8 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 66.07 |
| Shannon entropy | 0.64178 |
| G+C content | 0.51940 |
| Mean single sequence MFE | -32.85 |
| Consensus MFE | -12.99 |
| Energy contribution | -13.76 |
| Covariance contribution | 0.77 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.755742 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15119875 96 - 21146708 -------------CAGAGAUGACCACUAGCUAGUAACUCAGAAGUGGAUCAGCCACUUGAGGGGAACUGGUUUCUGGUCACCAGAUGCCACUUUUCGACAGCUCAAGUG- -------------..(((.((((((..(((((((..(((..((((((.....))))))..)))..)))))))..))))))...((.........)).....))).....- ( -31.80, z-score = -1.62, R) >droSim1.chr2R 13829199 96 - 19596830 -------------CAGCGAUGACCACUAGCUAGUAAGUCAGAAGUGGAUCAGCCACUUGGGGCGAACUGGUUUCUGGUCACCAGAUGCCACUUUUCGACAGCUCAAGUG- -------------.((((.((((((..(((((((..(((..((((((.....))))))..)))..)))))))..)))))).).((.........))....)))......- ( -32.50, z-score = -1.66, R) >droSec1.super_1 12634510 96 - 14215200 -------------CAGCGAUGACCACUAGCUAGUAAGUCAGAAGUGGAUCAGCCACUUGGGGCGAACUGGUUUCUGGUCACCAGAUGCCACUUUUCGACAGCUCAAGUG- -------------.((((.((((((..(((((((..(((..((((((.....))))))..)))..)))))))..)))))).).((.........))....)))......- ( -32.50, z-score = -1.66, R) >droYak2.chr2R 7080379 96 + 21139217 -------------CAGCGAUGACCACUGGCUAGUAAGUCAGAAGUGGAUCAGCCACUUGAGGCGAACUGGUUUCUGGUCACCAGAUGCCACUUUUGGACAGCUCAAGUG- -------------.(((..((((((..(((((((..(((..((((((.....))))))..)))..)))))))..))))))(((((.......)))))...)))......- ( -35.90, z-score = -2.32, R) >droEre2.scaffold_4845 9319450 96 - 22589142 -------------CAGCAAUGACCACUGGCCAGUAAGUCAGAAGUGGACCAGCCACUGGAUGCGAACUGGUUUCUGAUCAGCAGAUGCCACUUUUGGACAGCUCAAGUG- -------------.(((..(((.((..(((((((..(((...(((((.....))))).)))....)))))))..)).))).....(((((....))).)))))......- ( -26.90, z-score = 0.25, R) >droPer1.super_4 5272046 103 - 7162766 CGGGGAUGACCACGAAGUGUAAUCGCUGGCCAUCGA--CAAAAGUGGAUCGAGCUGACGAGAUG----GGUUUCUUGUCAUCGCCUGCCACUUUUGGCCAGCUCAAGUG- ((((.....)).))..........((((((((....--..(((((((..(((..((((((((..----....)))))))))))....))))))))))))))).......- ( -39.10, z-score = -2.24, R) >dp4.chr3 9953812 103 - 19779522 CGGGGAUGACCACGAAGUGUAAUCGCUGGCCAUCGA--CAAAUGUGGACCGAGCUGACGAGAUG----GGUUUCUUGUCAUCGCCUGCCACUUUUGGCCAGCUCAAGUG- ((((.....)).))..........((((((((....--.(((.((((..(((..((((((((..----....)))))))))))....))))))))))))))).......- ( -35.70, z-score = -1.14, R) >droVir3.scaffold_13324 2757131 99 - 2960039 ------UGUAAAUAGUUUGCACUUGUUGACCAAUG--CAAAAAGUGGAUCGAGCACUUG--GCCACUUGGUGGCUUCUCUACUCAUG-CACUCGAUGCGGGUAUGCGUCA ------.........((((((.(((.....)))))--)))).((((.((.(((.....(--(((((...))))))......))))).-)))).((((((....)))))). ( -28.40, z-score = -0.62, R) >consensus _____________CAGCGAUGACCACUGGCCAGUAAGUCAGAAGUGGAUCAGCCACUUGAGGCGAACUGGUUUCUGGUCACCAGAUGCCACUUUUGGACAGCUCAAGUG_ .......................((((((((......((((((((((...........(((((......))))).............))))))))))..))))..)))). (-12.99 = -13.76 + 0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:21 2011