| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,116,423 – 15,116,488 |
| Length | 65 |
| Max. P | 0.581648 |
| Location | 15,116,423 – 15,116,488 |
|---|---|
| Length | 65 |
| Sequences | 6 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 75.05 |
| Shannon entropy | 0.47538 |
| G+C content | 0.47048 |
| Mean single sequence MFE | -19.07 |
| Consensus MFE | -12.10 |
| Energy contribution | -12.18 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.39 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.581648 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15116423 65 - 21146708 UUUUGCUGAG----AAACCACCACCGAGUGGUUGCAGUGCUGGCAAAUGCCGUUGGUUCAUCUGAGUGC ....(((.((----((((((((((...))))).........(((....)))...))))..))).))).. ( -18.20, z-score = -0.21, R) >droEre2.scaffold_4845 9316042 68 - 22589142 UUUUGCUGAGAAA-CAACCACCACCAAGUGGUUGCAGUGUUGGCAAAUGUCGGUGGUUCAUUUGAGUGG ..(..((.(((..-.((((((((((....))).........(((....))))))))))..))).))..) ( -19.20, z-score = -0.54, R) >droYak2.chr2R 7076836 69 + 21139217 UUUUGCUGAGAAGCAAACCACCACCAAGUGGUUGCAGUGCUGGCAAAUGUCGGUGGUUCAUUUGAGUGC .((((((....))))))....((((((((((..((...((((((....)))))).))))))))).))). ( -21.10, z-score = -0.72, R) >droSec1.super_1 12631114 65 - 14215200 UUUUGCUGAG----AAACCACCACCAAGUGGUUGCAGUGCUGGCAAAUGCCGGUGGUUCAUCUGAGUGG ..(..((.((----(((((((((((....))).........(((....))))))))))..))).))..) ( -24.40, z-score = -2.01, R) >droSim1.chr2R 13825811 65 - 19596830 UUUUGCUGAG----AAACCACCACCAAGUGGUUGCAGUGCUGGCAAAUGCCGGUGGUUCAUCUGAGUGG ..(..((.((----(((((((((((....))).........(((....))))))))))..))).))..) ( -24.40, z-score = -2.01, R) >droWil1.scaffold_180697 1157007 62 + 4168966 UUUCGUUGAAA---UGUUAACAAUUUAAUGUUAGCCACACUGUUAAUCUAAAGUUAUCCAUGACA---- ..((((.((..---.(((((((......)))))))...(((..........)))..)).))))..---- ( -7.10, z-score = -0.29, R) >consensus UUUUGCUGAG____AAACCACCACCAAGUGGUUGCAGUGCUGGCAAAUGCCGGUGGUUCAUCUGAGUGG ....(((.((.....((((((((((....))).........(((....))))))))))...)).))).. (-12.10 = -12.18 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:20 2011