Locus 4702

Sequence ID dm3.chr2R
Location 15,111,109 – 15,111,199
Length 90
Max. P 0.930138
window6453 window6454

overview

Window 3

Location 15,111,109 – 15,111,199
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 97.44
Shannon entropy 0.04483
G+C content 0.62889
Mean single sequence MFE -39.08
Consensus MFE -36.82
Energy contribution -37.22
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.29
Structure conservation index 0.94
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.19
SVM RNA-class probability 0.586654
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 15111109 90 + 21146708
UCAGCUCGUCCGCCUCGCUGGCCUCCAUGCCAGGUCUCAGUGCCUACCUGGGCAUGCGCUCCCAUGUGGUUGGCCACAUGGGUAUGGGAU
...((......))....(((((......)))))((((((((((((....)))))).....(((((((((....)))))))))..)))))) ( -38.10, z-score =  -0.79, R)
>droEre2.scaffold_4845 9310706 90 + 22589142
UCAGCUCGUCCGCCUCGCUGGCCUCCAUGCCAGGUCUCACUGCCUACCUGGGCAUGCGAUCCCAUGUGGUUGGCCACAUGGGUAUGGGCU
..(((((((..(((.....))).((((((((((((..........)))).)))))).)).(((((((((....))))))))).))))))) ( -41.00, z-score =  -1.96, R)
>droYak2.chr2R 7071497 90 - 21139217
UCAGCUCGUCCGCCUCGCUGGCCUCCAUGCCAGGUCUCACUGCCUACCUGGGCAUGCGAUCCCAUGUGGUUGGCCACAUGGGUAUGGGUU
...........(((.....))).((((((((.((((.((.(((((....))))))).)))).(((((((....))))))))))))))).. ( -38.90, z-score =  -1.55, R)
>droSec1.super_1 12625801 90 + 14215200
UCAGCUCGUCCGCCUCGCUGGCUUCCAUGCCAGGUCUCAGUGCCUACCUGGGCAUGCGCUCCCAUGUGGUUGGCCACAUGGGUAUGGGAU
...((......))....(((((......)))))((((((((((((....)))))).....(((((((((....)))))))))..)))))) ( -39.30, z-score =  -1.37, R)
>droSim1.chr2R 13820075 90 + 19596830
UCAGCUCGUCCGCCUCGCUGGCCUCCAUGCCAGGUCUCAGUGCCUACCUGGGCAUGCGCUCCCAUGUGGUUGGCCACAUGGGUAUGGGAU
...((......))....(((((......)))))((((((((((((....)))))).....(((((((((....)))))))))..)))))) ( -38.10, z-score =  -0.79, R)
>consensus
UCAGCUCGUCCGCCUCGCUGGCCUCCAUGCCAGGUCUCAGUGCCUACCUGGGCAUGCGCUCCCAUGUGGUUGGCCACAUGGGUAUGGGAU
....(((((.(((....(((((......)))))......((((((....)))))))))..(((((((((....))))))))).))))).. (-36.82 = -37.22 +   0.40)

alignment

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secondary structure

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dotplot

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Window 4

Location 15,111,109 – 15,111,199
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 97.44
Shannon entropy 0.04483
G+C content 0.62889
Mean single sequence MFE -38.88
Consensus MFE -36.60
Energy contribution -36.60
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.02
Structure conservation index 0.94
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.35
SVM RNA-class probability 0.930138
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 15111109 90 - 21146708
AUCCCAUACCCAUGUGGCCAACCACAUGGGAGCGCAUGCCCAGGUAGGCACUGAGACCUGGCAUGGAGGCCAGCGAGGCGGACGAGCUGA
...((...(((((((((....)))))))))....((((((.((((..........))))))))))..)).((((..(.....)..)))). ( -37.90, z-score =  -1.58, R)
>droEre2.scaffold_4845 9310706 90 - 22589142
AGCCCAUACCCAUGUGGCCAACCACAUGGGAUCGCAUGCCCAGGUAGGCAGUGAGACCUGGCAUGGAGGCCAGCGAGGCGGACGAGCUGA
.(((....(((((((((....))))))))).((.((((((.((((..........)))))))))))))))((((..(.....)..)))). ( -41.70, z-score =  -2.67, R)
>droYak2.chr2R 7071497 90 + 21139217
AACCCAUACCCAUGUGGCCAACCACAUGGGAUCGCAUGCCCAGGUAGGCAGUGAGACCUGGCAUGGAGGCCAGCGAGGCGGACGAGCUGA
...((...(((((((((....))))))))).((.((((((.((((..........)))))))))))))).((((..(.....)..)))). ( -38.90, z-score =  -2.19, R)
>droSec1.super_1 12625801 90 - 14215200
AUCCCAUACCCAUGUGGCCAACCACAUGGGAGCGCAUGCCCAGGUAGGCACUGAGACCUGGCAUGGAAGCCAGCGAGGCGGACGAGCUGA
........(((((((((....)))))))))(((.((((((.((((..........))))))))))...(((.....)))......))).. ( -38.00, z-score =  -2.06, R)
>droSim1.chr2R 13820075 90 - 19596830
AUCCCAUACCCAUGUGGCCAACCACAUGGGAGCGCAUGCCCAGGUAGGCACUGAGACCUGGCAUGGAGGCCAGCGAGGCGGACGAGCUGA
...((...(((((((((....)))))))))....((((((.((((..........))))))))))..)).((((..(.....)..)))). ( -37.90, z-score =  -1.58, R)
>consensus
AUCCCAUACCCAUGUGGCCAACCACAUGGGAGCGCAUGCCCAGGUAGGCACUGAGACCUGGCAUGGAGGCCAGCGAGGCGGACGAGCUGA
........(((((((((....)))))))))....((((((.((((..........)))))))))).....((((..(.....)..)))). (-36.60 = -36.60 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:19 2011