| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,103,509 – 15,103,601 |
| Length | 92 |
| Max. P | 0.549788 |
| Location | 15,103,509 – 15,103,601 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 84.80 |
| Shannon entropy | 0.26080 |
| G+C content | 0.51989 |
| Mean single sequence MFE | -30.38 |
| Consensus MFE | -22.24 |
| Energy contribution | -23.13 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.549788 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15103509 92 - 21146708 -----------------GCACGU-UUUAUGAUCGCAACAAGGAGU---GGAGCUAAUGCGUCCAUUACUCAUACGCCAUGUUGCAGCCAGGCAACAAUUUUGCCGCGCCAGCA -----------------((....-.........((((((.((.((---((((.(((((....)))))))).))).)).)))))).((..(((((.....)))))..))..)). ( -29.50, z-score = -1.58, R) >droAna3.scaffold_13266 8426315 110 + 19884421 GCACGUUUUAUGAUCCAGCCCCUGUCUCUGCCCCUGCCACGGAGGAG-GGCUCUAAUGCGUCCAUUACUCAUACGCCAUGCUG--GCCGUGCAACAAUAUUGCCCCGCCAGCA ........(((((...(((((...((((((.........)))))).)-)))).(((((....))))).))))).....(((((--((.(.((((.....)))).).))))))) ( -33.40, z-score = -0.81, R) >droEre2.scaffold_4845 9303226 92 - 22589142 -----------------GCACGU-UUUAUGAUCGCAACAAGGAGU---GGAGCUAAUGCGUCCAUUACUCAUACGCCAUGUUGCAGCCAGGCAACAAUUUUGCCGAGCCAGCA -----------------((....-.........((((((.((.((---((((.(((((....)))))))).))).)).)))))).((..(((((.....)))))..))..)). ( -30.80, z-score = -2.48, R) >droYak2.chr2R 7063720 95 + 21139217 -----------------GCACGU-UUUAUGAUCGCAACAAGGAGUGGAGGAGCUAAUGCGUCCAUUACUCAUACGCCAUGUUGCAGCCAGGCAACAAUUUUGCCGCGCCAGCA -----------------((....-.........((((((.((.(((...(((.(((((....)))))))).))).)).)))))).((..(((((.....)))))..))..)). ( -30.00, z-score = -1.21, R) >droSec1.super_1 12618320 92 - 14215200 -----------------GCACGU-UUUAUGAUCGCAACAAGGAGU---GGAGCUAAUGCGUCCAUUACUCAUACGCCAUGUUGCAGCCAGGCAACAAUUUUGCCGCGCCAGCA -----------------((....-.........((((((.((.((---((((.(((((....)))))))).))).)).)))))).((..(((((.....)))))..))..)). ( -29.50, z-score = -1.58, R) >droSim1.chr2R 13813728 92 - 19596830 -----------------GCACGU-UUUAUGAUCGCAACAAGGAGU---GGAGCUAAUGCGUCCAUUACUCAUACGCCAUGUUGCAGCCAGGCAACAAUUUUGCCGCACCAGCA -----------------((....-.........((((((.((.((---((((.(((((....)))))))).))).)).)))))).((..(((((.....)))))))....)). ( -29.10, z-score = -2.00, R) >consensus _________________GCACGU_UUUAUGAUCGCAACAAGGAGU___GGAGCUAAUGCGUCCAUUACUCAUACGCCAUGUUGCAGCCAGGCAACAAUUUUGCCGCGCCAGCA .................((..............((((((.((.((....(((.(((((....))))))))..)).)).)))))).((..(((((.....)))))..))..)). (-22.24 = -23.13 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:18 2011