| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,265,755 – 3,265,807 |
| Length | 52 |
| Max. P | 0.816579 |
| Location | 3,265,755 – 3,265,807 |
|---|---|
| Length | 52 |
| Sequences | 7 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 67.65 |
| Shannon entropy | 0.62211 |
| G+C content | 0.44070 |
| Mean single sequence MFE | -13.09 |
| Consensus MFE | -6.37 |
| Energy contribution | -6.31 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.89 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.816579 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3265755 52 - 23011544 GUUGCACGGUUGGGAGAGGUCUUUCGACCUUUUCCCCGGA-----AAAAUUUCCCUU .......((..((((((((((....))))))))))))(((-----(....))))... ( -18.70, z-score = -1.92, R) >droSim1.chr2L 3202068 52 - 22036055 GUUGCACGGUUGGGAGAGGUCUUUCGACCUUUUCCCCGGA-----AAAAUUUCCCUU .......((..((((((((((....))))))))))))(((-----(....))))... ( -18.70, z-score = -1.92, R) >droSec1.super_5 1407881 52 - 5866729 GUUGCACGGUUGGGAGAGGUCUUUCGACCUUUUCCCCGGA-----AAAAUUUCCCUU .......((..((((((((((....))))))))))))(((-----(....))))... ( -18.70, z-score = -1.92, R) >droYak2.chr2L 3248559 52 - 22324452 GUUGCACGGUUGGGAGAGGUCUUUCAAUCUUUUCCUCGGA-----AAAAUUUCCCUU .......(((((..((....))..)))))(((((....))-----)))......... ( -12.30, z-score = -0.33, R) >droEre2.scaffold_4929 3295600 52 - 26641161 GUUGCACGGUUGGCAUAGGUCUUUCAACCUUUUCCUCGGA-----AAAAUUUCCCCU .......((..((...((((......))))...))..(((-----(....)))))). ( -8.40, z-score = 0.29, R) >dp4.chr4_group4 5390992 50 + 6586962 -GUAUAUUUUUCAUAUACAUAUAUUGUAUUUGUUCUCUAA-----AGGAGUUCACC- -((((((.....))))))............((..(((...-----..)))..))..- ( -6.70, z-score = -1.26, R) >droWil1.scaffold_180708 12077641 57 - 12563649 GUUGCAUGUUGUAACCAAAAGCGGAGAAAUGUCCCAUAGAUGUACAGAAUUUCCCCU (((((.....)))))....((.(((((..((((........).)))...))))).)) ( -8.10, z-score = -0.62, R) >consensus GUUGCACGGUUGGGAGAGGUCUUUCGACCUUUUCCCCGGA_____AAAAUUUCCCUU .......(((((((((....)))))))))............................ ( -6.37 = -6.31 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:28 2011