| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,088,980 – 15,089,075 |
| Length | 95 |
| Max. P | 0.783200 |
| Location | 15,088,980 – 15,089,075 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 84.01 |
| Shannon entropy | 0.29425 |
| G+C content | 0.58243 |
| Mean single sequence MFE | -36.97 |
| Consensus MFE | -27.33 |
| Energy contribution | -27.00 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.783200 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15088980 95 - 21146708 AAUAGCAGGC-AGCGGGCAAAAAGUGAC-GUCCUGGGCCGA-CUGAAGGAAUUGGGUCAACUGCAACCGCCAGUUGGCAGCAGCUGCGGUUGCAUAAA .......(((-...((((..........-))))...)))((-((.((....)).))))...(((((((((.(((((....)))))))))))))).... ( -36.90, z-score = -1.54, R) >droSim1.chr2R 13799336 95 - 19596830 AACAGCAGGC-AGCGGGCAAAAAGUGAC-GUCCUGGGCCGA-CUGAAGGAAUUGGGUCAACUGCAACCGCCAGUUGGCAGCAGCUGCGGUUGCAUAAA .......(((-...((((..........-))))...)))((-((.((....)).))))...(((((((((.(((((....)))))))))))))).... ( -36.90, z-score = -1.36, R) >droSec1.super_1 12603903 95 - 14215200 AACAGCAGAC-AGCGGGCAAAAAGUGAC-GUCCUGGGCCGA-CUGAAGGAAUUGGGUCAACUGCAACCGCCAGUUGGCAGCAGCUGCGGUUGCAUAAA ....((....-.)).(((....((.(..-..)))..)))((-((.((....)).))))...(((((((((.(((((....)))))))))))))).... ( -33.10, z-score = -0.63, R) >droYak2.chr2R 7049111 92 + 21139217 ----GCAGGCAAGCGGGCAAAAAGUGAC-GUCCUGGGCCGA-CUAAAGGAAUUGGGUCAACUGCAGCCGGCAGUUGGCGGCAGCUGUGGUUGCAUAAA ----((((.(((((((((..........-))))...(((..-((((.....))))(((((((((.....)))))))))))).))).)).))))..... ( -35.20, z-score = -1.21, R) >droEre2.scaffold_4845 9288468 89 - 22589142 ------AGGC-AGCGGGCAAAAAGUGAC-GUCCUGGGCCGA-CUGAAGGAAUUGGGUCAACUGCAACCGCCAGUUGGCGGCAGCUGCGGUUGCAUAAA ------.(((-...((((..........-))))...)))((-((.((....)).))))...(((((((((.(((((....)))))))))))))).... ( -36.90, z-score = -1.79, R) >droAna3.scaffold_13266 8413569 80 + 19884421 -----------------CAGAGUGUCCCGGUCCUGGGCGGGCCUGGGAGAACUGGGUCAG-UGCAGCCGACAGUUGGCAGCAGCUGCGGUUGCAUAAG -----------------.....((.((((((((..((....))..)))...))))).))(-((((((((.((((((....)))))))))))))))... ( -42.80, z-score = -3.79, R) >consensus ____GCAGGC_AGCGGGCAAAAAGUGAC_GUCCUGGGCCGA_CUGAAGGAAUUGGGUCAACUGCAACCGCCAGUUGGCAGCAGCUGCGGUUGCAUAAA .............................(.((..(.((........))..)..)).)...((((((((.((((((....)))))))))))))).... (-27.33 = -27.00 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:15 2011