Locus 4698

Sequence ID dm3.chr2R
Location 15,088,033 – 15,088,135
Length 102
Max. P 0.984587
window6448

overview

Window 8

Location 15,088,033 – 15,088,135
Length 102
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 86.44
Shannon entropy 0.22794
G+C content 0.39906
Mean single sequence MFE -26.44
Consensus MFE -17.70
Energy contribution -18.74
Covariance contribution 1.04
Combinations/Pair 1.04
Mean z-score -3.16
Structure conservation index 0.67
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.17
SVM RNA-class probability 0.984587
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 15088033 102 - 21146708
UAGUUUGAGUGCUGCUGCACUCGAAAGUUUGCCCCAUAAGAUAUUCUC--UUUUUGCGAAGAAUUGAAUUUCCAGUUCCUCCUUAUUUCAUUUACCUGCGAACA
...(((((((((....))))))))).((((((..((.((((.....))--))..)).((.((((((......)))))).))................)))))). ( -26.10, z-score =  -3.79, R)
>droEre2.scaffold_4845 9287550 97 - 22589142
UAGUUUGAGUGCUGCUGCACUCGAAAGUUUGGCCCAUAAGAAAUUCUC--UUUCCGAGAAGAAUUGCAUUUCCAGUUCCAAGU--CCUUAUUCG-CAG--AACA
...(((((((((....))))))))).((((.((..(((((...(((((--.....)))))((((((......)))))).....--.)))))..)-).)--))). ( -29.20, z-score =  -3.49, R)
>droYak2.chr2R 7048151 101 + 21139217
UAGUUUGAGAGCUGCUGCACUCGAAAGUUUGGCCCAUAAGAAAUUCUCUUUUUCCGAGAAGAAUUGCAUUUCCAGUUCCAAGU--UCUUAGUUG-CAGCUAACA
.....((..((((((.((...(....)....))...((((((.(((((.......)))))((((((......))))))....)--)))))...)-)))))..)) ( -25.00, z-score =  -1.23, R)
>droSec1.super_1 12602950 102 - 14215200
UAUUUUGAGUGCUGCUGCACUCGAAAGUUUGCCCCAUAAGAUAUUCUC--UUUCUGCGAAGAAUUGAAUUUCCAGUUCCUCUUUAUUUCAUUUACCUGCGAACA
..((((((((((....))))))))))((((((.....((((.....))--)).....((.((((((......)))))).))................)))))). ( -27.20, z-score =  -4.35, R)
>droSim1.chr2R 13798397 102 - 19596830
UAGUUUGAGUGCUGCUGCACUCGAAAGUUUGCCCCAUAAGAUAUUCUC--UUUCUGCGAAGAAUUGAAUUUCCAGUUUCUCCUUAUUUCAUUUACCUGCGAACA
...(((((((((....))))))))).((((((.....((((.....))--)).....((..(((((......)))))..))................)))))). ( -24.70, z-score =  -2.96, R)
>consensus
UAGUUUGAGUGCUGCUGCACUCGAAAGUUUGCCCCAUAAGAUAUUCUC__UUUCUGCGAAGAAUUGAAUUUCCAGUUCCUCCUUAUUUCAUUUACCUGCGAACA
...(((((((((....))))))))).((((((...........(((...........)))((((((......))))))...................)))))). (-17.70 = -18.74 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:14 2011