| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,079,504 – 15,079,599 |
| Length | 95 |
| Max. P | 0.647835 |
| Location | 15,079,504 – 15,079,599 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 93.57 |
| Shannon entropy | 0.10964 |
| G+C content | 0.46951 |
| Mean single sequence MFE | -32.06 |
| Consensus MFE | -26.22 |
| Energy contribution | -27.10 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.647835 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15079504 95 - 21146708 AGCUCUCCAGCA--AGAGGUGACUCAAUAGCUGGG--GAGCCAGUGAAUGAGCAACUGAAUGAAUUUCAAGCACGGUUCUUGCUCUCUGGCUUAAUAUG ...((((((((.--.(((....)))....))))))--))(((((.((..(((.(((((..((.....))....))))))))..)).)))))........ ( -36.00, z-score = -2.95, R) >droSim1.chr2R 13789593 97 - 19596830 AGCUCUCCAGCA--AGAGGUGACUCAAUAGCUGGGCUGAACCAGUGAAUGAGCAACUGAAUGAAUUUCAAGCACGGUUCUUGCUCUCUGGCUUAAUAUG ((((....((((--((((.((.((((...(((((......)))))...))))....((((.....))))....)).))))))))....))))....... ( -29.40, z-score = -1.20, R) >droSec1.super_1 12594443 95 - 14215200 AGCUCUCCAGCA--AGAGGUGACUCAAUAGCUGGG--GAGACAGUGAAUGAGCAACUGAAUGAAUUUCAAGCACGGUUCUUGCUCUCUGGCUUAAUAUG ..(((((((((.--.(((....)))....))))))--))).(((.((..(((.(((((..((.....))....))))))))..)).))).......... ( -32.70, z-score = -2.30, R) >droYak2.chr2R 7039699 93 + 21139217 AGCACUCCAGCA--AGAGGUGACUCAAUGGCUG----GAGCGAGUGAAUGAGCAACUGAAUGAAUUUCAAGCACGGUUCUUGCUCUCUGGCUUAAUAUG (((.(((((((.--.(((....)))....))))----))).(((..(..((((...((..((.....))..))..)))))..)))....)))....... ( -31.10, z-score = -1.89, R) >droEre2.scaffold_4845 9279192 95 - 22589142 AGCUCUCUAGCAAGAGAGGUGACUCAAUAGCUG----GAGCGAGUGAAUGAGCAGCUGAAUGAAUUUCAAGCACGGUUCUUGCUCCCUGGCUUAAUAUG (((((((((((.(..(((....)))..).))))----))).(((..(..((((.((((((.....))).)))...)))))..)))...))))....... ( -31.10, z-score = -1.20, R) >consensus AGCUCUCCAGCA__AGAGGUGACUCAAUAGCUGGG__GAGCCAGUGAAUGAGCAACUGAAUGAAUUUCAAGCACGGUUCUUGCUCUCUGGCUUAAUAUG ......(((((....(((....)))....)))))...(((((((.((..(((.(((((..((.....))....))))))))..)).)))))))...... (-26.22 = -27.10 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:13 2011