| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,074,996 – 15,075,090 |
| Length | 94 |
| Max. P | 0.500000 |
| Location | 15,074,996 – 15,075,090 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 76.56 |
| Shannon entropy | 0.43348 |
| G+C content | 0.42538 |
| Mean single sequence MFE | -25.95 |
| Consensus MFE | -13.42 |
| Energy contribution | -14.78 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 15074996 94 - 21146708 UCAAGUGGCAAAAAUUG------AAUGCAAAUGCAAAUUUAGCUGCCAAUGAUUUCAUCUCAAGUUGUUGUCGCAGCAAACGAAUGUCACU--UGCCUGGGG .(((((((((.......------..(((....)))......((((((((..((((......))))..)))..))))).......)))))))--))....... ( -27.50, z-score = -1.99, R) >droSim1.chr2R 13785132 92 - 19596830 UCAAGUGGCAAAAAUUG------AAUGCAAAUGCAAAUUUAGCUGCCAAUGAUUUCAUCUCAAGUUGU--UCGCAGCAAACGAAUGUCACU--UGCCUGGGG .(((((((((.......------..(((....)))......(((((.((..((((......))))..)--).))))).......)))))))--))....... ( -27.10, z-score = -2.20, R) >droSec1.super_1 12590024 92 - 14215200 UCAAGUGGCAAAAAUUG------AAUGCAAAUGCAAAUUUAGCUGCCAAUGAUUUCAUCUCAAGUUGU--UCGCAGCAAACGAAUGUCACU--UGCCUGGGG .(((((((((.......------..(((....)))......(((((.((..((((......))))..)--).))))).......)))))))--))....... ( -27.10, z-score = -2.20, R) >droYak2.chr2R 7035108 100 + 21139217 UCAAGUGGCGAAAAUUGAAUGCAAAUGCAAAUGCAAAUUUAGCUGCCAAUGAUUUCAUCUCGAGUUGU--UCGCAGCAAACAAAUGUCACUUGUGCCUGGGG .(((((((((.........((((........))))......(((((.((..((((......))))..)--).))))).......)))))))))......... ( -27.60, z-score = -1.24, R) >droEre2.scaffold_4845 9274823 92 - 22589142 UCAAGUGGCAAAAAUUG------AAUGCAAAUGCAAAUUUAGCUGCCAAUGAUUUCAUCUCAAGUUGU--UCGCAACAAACAAAUGUCACU--UGCCUGGGG .(((((((((.......------..(((....)))......(.(((.((..((((......))))..)--).))).).......)))))))--))....... ( -20.50, z-score = -0.62, R) >droAna3.scaffold_13266 8402384 80 + 19884421 -------GCAGG-----------AGGCCAGCCGCAA--UUGGCAGCCACAAGCUGGUGCUUAAAUU-UAUUUCCUGCACAGUGUUGGGAUA-AUACUUGGAG -------(((((-----------((((..((((...--.)))).)))..((((....)))).....-....)))))).((((((((...))-)))).))... ( -25.90, z-score = -0.85, R) >consensus UCAAGUGGCAAAAAUUG______AAUGCAAAUGCAAAUUUAGCUGCCAAUGAUUUCAUCUCAAGUUGU__UCGCAGCAAACGAAUGUCACU__UGCCUGGGG ...(((((((...............(((....)))......(((((..(((((((......)))))))....))))).......)))))))........... (-13.42 = -14.78 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:13 2011