| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,074,710 – 15,074,769 |
| Length | 59 |
| Max. P | 0.969055 |
| Location | 15,074,710 – 15,074,769 |
|---|---|
| Length | 59 |
| Sequences | 5 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 95.93 |
| Shannon entropy | 0.06962 |
| G+C content | 0.47966 |
| Mean single sequence MFE | -16.10 |
| Consensus MFE | -15.06 |
| Energy contribution | -15.46 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.81 |
| SVM RNA-class probability | 0.969055 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15074710 59 - 21146708 AGAAAAAGGGGGCGGUCGGCAUUCAUCGCGACAUCGAUAGGUCUCUUUUUCAUCUUUCA .((((((((((.(.(((((...((.....))..))))).).))))))))))........ ( -17.30, z-score = -2.95, R) >droEre2.scaffold_4845 9274538 59 - 22589142 AGAAAAAGGGGGCGGUCCACAUUCAUCGCGACAUCGAUAGGUCUCUUUUUCAUCUUUCA .(((((((((.(((((........)))))...(((....))))))))))))........ ( -14.70, z-score = -2.17, R) >droYak2.chr2R 7034410 59 + 21139217 AGAAAAAGGGGGCGGUCGACAUUCAUCGCGACAUCGAUAGGUCUCUCUUUCAUCUUUCA .((((.(((((.(.(((((...((.....))..))))).).))))).))))........ ( -14.70, z-score = -1.54, R) >droSec1.super_1 12589721 58 - 14215200 AGAAAAAGGGGGCGGUCGGCAUUCAUCGCGACAUCGAUAGGUCUC-CUUUCAUCUUUCA (((.(((((((((.(((((...((.....))..)))))..)))))-))))..))).... ( -16.00, z-score = -1.74, R) >droSim1.chr2R 13784842 59 - 19596830 AGGAAAAGGGGGCGGUCGGCAUUCAUCGCGACAUCGAUAGGUCUCUUUUUCAUCUUUCA ..(((((((((((.(((((...((.....))..)))))..)))))))))))........ ( -17.80, z-score = -2.94, R) >consensus AGAAAAAGGGGGCGGUCGGCAUUCAUCGCGACAUCGAUAGGUCUCUUUUUCAUCUUUCA .((((((((((.(.(((((...((.....))..))))).).))))))))))........ (-15.06 = -15.46 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:12 2011