| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,073,639 – 15,073,691 |
| Length | 52 |
| Max. P | 0.968348 |
| Location | 15,073,639 – 15,073,691 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 81.49 |
| Shannon entropy | 0.32098 |
| G+C content | 0.46508 |
| Mean single sequence MFE | -14.04 |
| Consensus MFE | -11.35 |
| Energy contribution | -11.91 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.80 |
| SVM RNA-class probability | 0.968348 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15073639 52 + 21146708 UCUUCAUAGUGUGCCU-ACUCGAGCUAUCUUCUCUGGCUGCACUGGGAGAAAA (((((.(((((((((.-....(((.......))).))).)))))))))))... ( -15.90, z-score = -1.98, R) >droSim1.chr2R 13783737 52 + 19596830 UCUUCUUAGUGUGCCU-ACUCGUACUAUCUUAUCUGGCGGCACUGAGAGAAAA ..(((((((((((((.-..................))).)))))))))).... ( -15.81, z-score = -2.73, R) >droSec1.super_1 12588698 52 + 14215200 UCUUCUUAGUGUGCCU-ACUUGUCCUAUCUUUUCUGGCUGCACUGGGAGAAAA ..(((((((((((((.-..................))).)))))))))).... ( -15.01, z-score = -2.60, R) >droYak2.chr2R 7033348 50 - 21139217 ---UCUUAGUGUGCCUUAGUGUUCCUAUCUUCCCUGGCUGCACUGGCAGAAAA ---......(.((((..(((((.((..........))..))))))))).)... ( -12.00, z-score = -1.05, R) >droEre2.scaffold_4845 9273450 50 + 22589142 ---UCCUAGUGCGCCUUAGUGUUCCUAUCUUCCCUAGCUGCACUGAGAGAAAA ---...........((((((((..(((.......)))..))))))))...... ( -11.50, z-score = -1.78, R) >consensus UCUUCUUAGUGUGCCU_ACUCGUCCUAUCUUCUCUGGCUGCACUGGGAGAAAA ...((((((((((((....................))).)))))))))..... (-11.35 = -11.91 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:11 2011