| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,066,501 – 15,066,595 |
| Length | 94 |
| Max. P | 0.858750 |
| Location | 15,066,501 – 15,066,595 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 79.92 |
| Shannon entropy | 0.38476 |
| G+C content | 0.38073 |
| Mean single sequence MFE | -25.25 |
| Consensus MFE | -13.04 |
| Energy contribution | -14.52 |
| Covariance contribution | 1.47 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.858750 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15066501 94 + 21146708 GUUGUUGUUUUU-GUUGUCGCGUGUUU-UUUUACUCGGCAGCACAGCAACUAUUUAUUUAUUUAGGCAAUUUCGCUGGCAAAAACAAAAGUGGCCU ((((((((....-(((((((.(((...-...))).)))))))))))))))..............(((......)))(((....((....)).))). ( -26.50, z-score = -2.30, R) >droWil1.scaffold_180697 1087823 94 - 4168966 GCCCUUGUUUUUUGUUGUCGCGCGUGUAUCUCUCUCCGCGUGUGUGUGAGUGUGUGCAUCGUGUGACGAUAACGAUAUAAAAAUCCAAUAAAAU-- ....((((((.((((((((((((((((((..(.((((((....))).))).).))))).))))))))))))).)).))))..............-- ( -28.20, z-score = -4.09, R) >droSim1.chr2R 13774161 94 + 19596830 GUUGUUGUUUUU-GUUGUCGCGUGUUU-UUUUAUUCGGCAGCACAGCAACUAUUUAUUUAUUUAGGCAAUUUUGCUGGCAAAAACAAAAGUGGCCU ((((((((....-(((((((.(((...-...))).))))))))))))))).............((((..(((((.(......).)))))...)))) ( -25.70, z-score = -2.07, R) >droSec1.super_1 12581490 94 + 14215200 GUUGUUGUUUUU-GUUGUCGCGUGUUU-UUUUAUUCGGCAGCACAGCAACUAUUUAUUUAUUUAGGCAAUUUCGCUGGCAAAAACAAAAGUGGCCU ((((((((....-(((((((.(((...-...))).)))))))))))))))..............(((......)))(((....((....)).))). ( -24.60, z-score = -1.85, R) >droYak2.chr2R 7026224 93 - 21139217 GUUGUUGUUUUU-GUUGUCGCGUGUUU-UUU-AUUCGGCAGCACAGCAACUAUUUAUUUAUUUAGGCAAUUUGGCUAGCAAAAACAAAAGUGCCUU ((((((((....-(((((((.(((...-..)-)).))))))))))))))).............(((((.((((...........))))..))))). ( -25.40, z-score = -2.21, R) >droEre2.scaffold_4845 9266433 93 + 22589142 GUUGUUGUUUUU-GUUGUCGCGCGUUU-UUU-AUUCGGCAGCACAGCAACUAUUUAUUUAUUUAGGCAAUUUCGCCUGCAAAAACAAAAGUGCUCU ((((((((....-(((((((.......-...-...)))))))))))))))............(((((......))))).................. ( -21.12, z-score = -0.85, R) >consensus GUUGUUGUUUUU_GUUGUCGCGUGUUU_UUUUAUUCGGCAGCACAGCAACUAUUUAUUUAUUUAGGCAAUUUCGCUGGCAAAAACAAAAGUGGCCU ((((((((.....(((((((.(((.......))).)))))))))))))))..............(((......))).................... (-13.04 = -14.52 + 1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:10 2011