| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,061,642 – 15,061,737 |
| Length | 95 |
| Max. P | 0.995130 |
| Location | 15,061,642 – 15,061,737 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 66.96 |
| Shannon entropy | 0.55823 |
| G+C content | 0.36826 |
| Mean single sequence MFE | -28.38 |
| Consensus MFE | -10.45 |
| Energy contribution | -12.13 |
| Covariance contribution | 1.68 |
| Combinations/Pair | 1.25 |
| Mean z-score | -3.11 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.77 |
| SVM RNA-class probability | 0.995130 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15061642 95 + 21146708 AAAAUGGG-UUCACGCUUGUUGUGGAAAC----ACAUUUCUUCGGGCAAAGAUUCCGAGAAUA--AAAUAACAUCCGUGACACCCAAUUUUCGUU---AGAGGUU------ ....((((-((((((..(((((((....)----))..((((.((((.......))))))))..--....))))..))))).)))))..((((...---.))))..------ ( -29.90, z-score = -3.34, R) >droYak2.chr2R 7021540 101 - 21139217 AAAAUGAGAUUCACGGUUGUUGUGCCAAC----AGAUUUCUGCUGGCAAAGAUCCGGAGAUUUCUGGAUCACAAUUGUGGCACUCAAAUUUUGUUUUUAGUGAUU------ ....((((..((((((((((..(((((.(----((....))).)))))..(((((((......)))))))))))))))))..))))...................------ ( -36.70, z-score = -4.45, R) >droSec1.super_1 12574465 95 + 14215200 AAUAUGGG-UUCACGGUUGUUGUGGAAAC----ACAAUUCUUCUGGCAAAGAUUCCGAGAAUA--AAAUAACAUCCGUGACACCCAAUUUUCGUU---AGAGGUU------ ....((((-(((((((.(((((((....)----)).((((((..((........)))))))).--....)))).)))))).)))))..((((...---.))))..------ ( -30.40, z-score = -3.53, R) >droSim1.chr2R 13767101 95 + 19596830 AAAAUGGG-UUCACGGUUGUUGUGGAAAC----ACAAUUCUUCUGACAAAGAUUCCGAGAAUA--AAAUAACAUCCGUGACACCCAAUUGUCGUU---AGAGCUU------ ....((((-(((((((.(((((((....)----)).((((((((.....))).....))))).--....)))).)))))).))))).........---.......------ ( -29.10, z-score = -3.38, R) >droWil1.scaffold_181009 1759248 105 + 3585778 AAUAUAGGUUUUA-GGUUUUUGUAUGAGUUUUUGGGGGUGUUCUG--AAAAAUUUCUCACAUA--CAAUUUCUUUUAUU-UUUGCAAUUUUCUCGUACUGUGUUUUAUCAU (((((((.....(-((...(((((.((((....((..((((..((--(........)))...)--).))..))...)))-).)))))...)))....)))))))....... ( -15.80, z-score = -0.88, R) >consensus AAAAUGGG_UUCACGGUUGUUGUGGAAAC____ACAAUUCUUCUGGCAAAGAUUCCGAGAAUA__AAAUAACAUCCGUGACACCCAAUUUUCGUU___AGAGGUU______ ....((((..((((((.((((((...............((((......))))...............)))))).))))))..))))......................... (-10.45 = -12.13 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:09 2011