| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,054,898 – 15,054,993 |
| Length | 95 |
| Max. P | 0.770003 |
| Location | 15,054,898 – 15,054,993 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 71.42 |
| Shannon entropy | 0.52887 |
| G+C content | 0.49180 |
| Mean single sequence MFE | -23.60 |
| Consensus MFE | -14.80 |
| Energy contribution | -15.22 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.30 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.770003 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15054898 95 + 21146708 ----AAAGUACGUUUGUAUCUUGGGAUCAAGC-UGCGUAUGCUUAAUGUCUUUGGUUGCAAAUCGAGCAUACGCCCUGUCUGCGCUCGCUAGCCAUUUAC----- ----.......(((((.(((....))))))))-.(((((((((..((..............))..)))))))))...((..((....))..)).......----- ( -23.24, z-score = -0.06, R) >droSec1.super_1 12567705 95 + 14215200 ----GACAUACGUUUGUAUCUCGGGAUCAAGC-UGCGUAUGCUUAAUGUCUUUUGUUGCAAAUCAAGCAUACGCCCUGUCUGCGCUCGCUAGCCACUUAC----- ----((((...(((((.(((....))))))))-.((((((((((..(((........)))....))))))))))..))))((.(((....))))).....----- ( -25.30, z-score = -1.40, R) >droSim1.chr2R 13759211 99 + 19596830 GACAUAUGUACGUUUGUAUAUCGGGAUCAAGC-UGCGUAUGCUUAAUGUCUUUUGUUGCAAAUCACGCAUACUCCCUGUCUGCGCUCGCUAGCCAUUUAC----- ((((.((((((....)))))).((((......-(((((.(((.(((......)))..)))....)))))...))))))))((.(((....))))).....----- ( -19.20, z-score = 0.64, R) >droYak2.chr2R 7014489 88 - 21139217 ----------------UGCCACGGGAUCACGU-UGCGUAUGCUUAAUGUCUUUUGCUGCAAAUCUAGCAUACGCCCUGUCUGCGCUCGCUAGCCAUUUCCUUUCG ----------------.((.(((((.......-.(((((((((...(((........))).....))))))))))))))..))(((....)))............ ( -20.40, z-score = -0.26, R) >droEre2.scaffold_4845 9254828 86 + 22589142 ------------GACAUGCCUUGGGAUCAAGC-UGCGUAUGCUUGAUGUCUCUUGUUGCAAAUCAAGCAUACGCCCUGUCUGC-CCCGCCAGCCACUUCC----- ------------.....((..((((..((..(-.(((((((((((((..............)))))))))))))...)..)).-))))...)).......----- ( -27.34, z-score = -2.56, R) >droAna3.scaffold_13266 8380839 86 - 19884421 ----AGAAAACUUUGCCCGCGCUGGGUCACCCGUGCGUAUGCUUAAUGUCAUUAGCUA-AGAUCCAGCAUACGCCCUGUCUGC--AGAGUAAC------------ ----.....(((((((..((((.((....)).))))(((((((....(((........-.)))..))))))).........))--)))))...------------ ( -26.10, z-score = -1.96, R) >consensus _____A__UACGUUUGUAUCUCGGGAUCAAGC_UGCGUAUGCUUAAUGUCUUUUGUUGCAAAUCAAGCAUACGCCCUGUCUGCGCUCGCUAGCCAUUUAC_____ .....................((((..((..(..((((((((((..(((........)))....))))))))))...)..))..))))................. (-14.80 = -15.22 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:08 2011