| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,265,027 – 3,265,122 |
| Length | 95 |
| Max. P | 0.983224 |
| Location | 3,265,027 – 3,265,122 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 63.00 |
| Shannon entropy | 0.71560 |
| G+C content | 0.36055 |
| Mean single sequence MFE | -18.73 |
| Consensus MFE | -9.79 |
| Energy contribution | -9.72 |
| Covariance contribution | -0.07 |
| Combinations/Pair | 1.85 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.13 |
| SVM RNA-class probability | 0.983224 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 3265027 95 + 23011544 ---------UCCGCUUUAAACAAAAAAUAUUUGCAAAGCUGUCAGCUGCUUUUUGGCAACGAUUCUAAAUCGAAAUGUAAAUAUUCCAUUUGUCUAGCGCUGCA ---------..((((....(((((.((((((((((.(((.....)))(((....)))..((((.....))))...))))))))))...)))))..))))..... ( -21.00, z-score = -1.57, R) >droSim1.chr2L 3201331 95 + 22036055 ---------UCCGCUUUACACUAAAAAUAUUUGCAAAGCUAUCAGCUGCUUUUUGGCAACGAUUCUAAAUCGAAAUGUAAAUAUACCAUUUGUCUAGCGCUGCA ---------..((((..(((......(((((((((.(((.....)))(((....)))..((((.....))))...)))))))))......)))..))))..... ( -20.40, z-score = -1.71, R) >droSec1.super_5 1407168 95 + 5866729 ---------UCCGCUUUACACAAAAAAUAUUUGCAAAGCUUUCAGCUGCUUUUUGGCAACGAUUCUAAAUCGAAAUGUAAAUAUUCCAUUUGUCUAGCGCUGCA ---------..((((..(((.....((((((((((.(((.....)))(((....)))..((((.....))))...)))))))))).....)))..))))..... ( -21.50, z-score = -1.96, R) >droYak2.chr2L 3247836 93 + 22324452 ---------UCCGCUUUUCAC--AAAAUAUUUGCAAAGCUUUCAGCUGCUCUUUGGCAACGUUUCUAAAUCGAAAUGCAAAUAUUCCAUUUGUCUAGCGCUGCG ---------..((((....((--(((((((((((..(((.....)))(((....)))...(((((......)))))))))))))....)))))..))))..... ( -19.70, z-score = -1.43, R) >droEre2.scaffold_4929 3295047 93 + 26641161 ---------UCCGCUUUUCAC--AAUGUAUUUGCUAAGCAUUCAGCUGCUUUUUGGCAAGAUUUCUAAAUCGAAAUGCAAAUAUUCCAUUUGUCUAGCGCUGCA ---------..((((....((--((.((((((((..(((.....)))(((....)))...(((((......))))))))))))).....))))..))))..... ( -19.60, z-score = -0.63, R) >droAna3.scaffold_13260 420764 103 + 2125536 GCUAUACGAUACGAUUUUUUUACAGUGUGUUUAGAAUACUUUUA-UAGAUUUUUGGAAAAAAUUUUAUUGCGAUAUCGCUACUAGAAAUAUUUUUGGCGCGGCA (((...((...)).............((((..((((((.(((((-((((.((((....)))).))))..(((....)))...))))).))))))..))))))). ( -17.70, z-score = -0.54, R) >droWil1.scaffold_180708 12076781 80 + 12563649 ------------------------GGCCACAAACAAAAUUUAUGGUCUCCUUUGGAAAAUUCCACUUUAUCACAUAAUUUGUUGCACUCACAAACAGCCACUCA ------------------------(((....((((((..(((((........((((....))))........))))))))))).............)))..... ( -11.22, z-score = -1.08, R) >consensus _________UCCGCUUUACAC__AAAAUAUUUGCAAAGCUUUCAGCUGCUUUUUGGCAACGAUUCUAAAUCGAAAUGUAAAUAUUCCAUUUGUCUAGCGCUGCA ...........((((..........((((((((((.(((.....)))(((....)))..................))))))))))..........))))..... ( -9.79 = -9.72 + -0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:27 2011