| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,052,352 – 15,052,417 |
| Length | 65 |
| Max. P | 0.846262 |
| Location | 15,052,352 – 15,052,417 |
|---|---|
| Length | 65 |
| Sequences | 5 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 95.82 |
| Shannon entropy | 0.07219 |
| G+C content | 0.44240 |
| Mean single sequence MFE | -11.36 |
| Consensus MFE | -11.20 |
| Energy contribution | -11.20 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.846262 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15052352 65 + 21146708 AGCGGAAGCAACCGAC---GACAUUGAACUUAAGUUUGAAUACA--ACACAGGCGAACUUGAAUAACUCG .((....)).......---..........(((((((((....(.--.....).)))))))))........ ( -11.40, z-score = -1.78, R) >droSec1.super_1 12565163 68 + 14215200 AGCGGAAGCAACCCACUUCGACAUUGAACUUAAGUUUGAAUACA--GCACAGGCGAACUUGAAUAACUCG .((....))....................(((((((((....(.--.....).)))))))))........ ( -11.40, z-score = -0.80, R) >droSim1.chr2R 13756678 65 + 19596830 AGCGGAAGCAACCCAC---GACAUUGAACUUAAGUUUGAAUACA--GCACAGGCGAACUUGAAUAACUCG .((....)).......---..........(((((((((....(.--.....).)))))))))........ ( -11.40, z-score = -1.29, R) >droYak2.chr2R 7011879 67 - 21139217 AGCGGAAGCAACCCAC---GACAUUGAACUUAAGUUUGAAUACACAGCACAGGCGAACUUGAAUAACUCG .((....)).......---..........(((((((((....(........).)))))))))........ ( -11.20, z-score = -1.22, R) >droEre2.scaffold_4845 9252263 65 + 22589142 AGCGGAAGCAACCCAC---GACAUUGAACUUAAGUUUGAAUACA--GCACAGGCGAACUUGAAUAACUCG .((....)).......---..........(((((((((....(.--.....).)))))))))........ ( -11.40, z-score = -1.29, R) >consensus AGCGGAAGCAACCCAC___GACAUUGAACUUAAGUUUGAAUACA__GCACAGGCGAACUUGAAUAACUCG .((....))....................(((((((((....(........).)))))))))........ (-11.20 = -11.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:06 2011