Locus 4686

Sequence ID dm3.chr2R
Location 15,044,595 – 15,044,691
Length 96
Max. P 0.849780
window6435

overview

Window 5

Location 15,044,595 – 15,044,691
Length 96
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 89.58
Shannon entropy 0.14348
G+C content 0.29574
Mean single sequence MFE -19.67
Consensus MFE -17.33
Energy contribution -17.33
Covariance contribution 0.01
Combinations/Pair 1.10
Mean z-score -1.80
Structure conservation index 0.88
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.91
SVM RNA-class probability 0.849780
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 15044595 96 - 21146708
AAAAGUGUUGUACUCUUUUAAACAAUUUUAAUGCAACUAAAAUUAUUUCAGUAGUUCGCAGCAGCAAAGUAGUUGGGAUUAGUAAUGCAUUUUGUG
.(((((((..((((..((..(((.(((((..(((......((((((....))))))....)))..))))).)))..))..))))..)))))))... ( -17.40, z-score =  -0.30, R)
>droSim1.chr2R 13749142 96 - 19596830
AAAAGUGAUUUACUCAUUUUAACAACUUUAAUGCAACUUAAAUUAGUUCAGUAAUUCGCAGCAGCAAAGUAGUUGGGAUUAGUAAUGCAUUUUAUG
.((((((..(((((.((((((((.(((((..(((((((......))))..((.....)).)))..))))).)))))))).)))))..))))))... ( -23.10, z-score =  -2.98, R)
>droSec1.super_1 12557588 92 - 14215200
AAAAGUGUUUUACUCUUUUUAACAACUUUAAUGCAACUUAAAUUAGUUCAGUAAUUCGCAGCAACAAAGUAGUUGGGAUUAGU----CACUUUAUG
.((((((....(((..(((((((.(((((..(((((((......))))..((.....)).)))..))))).)))))))..)))----))))))... ( -18.50, z-score =  -2.12, R)
>consensus
AAAAGUGUUUUACUCUUUUUAACAACUUUAAUGCAACUUAAAUUAGUUCAGUAAUUCGCAGCAGCAAAGUAGUUGGGAUUAGUAAUGCAUUUUAUG
.((((((...((((..(((((((.(((((..(((......(((((......)))))....)))..))))).)))))))..))))...))))))... (-17.33 = -17.33 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:04 2011