| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,039,168 – 15,039,274 |
| Length | 106 |
| Max. P | 0.523253 |
| Location | 15,039,168 – 15,039,274 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 88.79 |
| Shannon entropy | 0.20019 |
| G+C content | 0.47827 |
| Mean single sequence MFE | -17.10 |
| Consensus MFE | -12.49 |
| Energy contribution | -13.29 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523253 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15039168 106 - 21146708 CCCCCCCCCCUUUCCUUAAGAGCACAAGUUUGCCAAUUUCCUCCAUCCAACGAGUGCCGUUUGCAAAAGUAGUUGUAUCCCCUUUUUUCCACUUAUCGCGCUCCAU ...................((((.....(((((.(((..((((........))).)..))).)))))....((.(((................))).))))))... ( -12.19, z-score = -1.55, R) >droSim1.chr2R 13743211 101 - 19596830 ----CCCCUUUUUCCUUACGAGCACAAGUUUGCCAAUUUCCUCCAUCCAACGAGGGCCGUUUGCAAAAGUAGUUGUAUCCCC-UUUUUCCACUUAGCUUGCUCCAU ----...............(((((....(((((.(((.(((((........)))))..))).)))))...(((((.......-..........))))))))))... ( -16.63, z-score = -1.18, R) >droSec1.super_1 12552013 99 - 14215200 -----CCCCUUUUCCUUACGAGCACAAGUUUGCCAAUUUCCUCCAUCCAACGAG-GCCGUUUGCAAAAGUAGUUGUAUCCCC-AUUUUCCACUUAGCUUGCUCCAU -----..............(((((....(((((.(((..((((........)))-)..))).)))))...(((((.......-..........))))))))))... ( -16.93, z-score = -2.35, R) >droYak2.chr2R 6998242 102 + 21139217 ----CCCCUUUUUCCUUACGAGCACAACUUUGCCAAUUUCCUCUAUCCAACGAGGGCUGUUUGCAAAAGUAGUUGUAUCCCCCCAUUUCCACUUAGCUUGCUCCAU ----...............(((((..(((((((.(((.(((((........)))))..))).)).)))))(((((..................))))))))))... ( -18.47, z-score = -1.93, R) >droEre2.scaffold_4845 9238934 100 - 22589142 ----CCCCUUUUUCCUUACGAGCACAG-UUUGCCCAUUUCCUCCAUCCAACGAGGGCUGUUCGCAAAAGCAGUUGUACCCCCCU-UUUGCACUUAGCUUGCUCCAU ----...............(((((...-...........((((........))))((((...(((((((..(.......)..))-)))))...)))).)))))... ( -21.30, z-score = -2.17, R) >consensus ____CCCCUUUUUCCUUACGAGCACAAGUUUGCCAAUUUCCUCCAUCCAACGAGGGCCGUUUGCAAAAGUAGUUGUAUCCCC_UUUUUCCACUUAGCUUGCUCCAU ...................((((.....(((((.(((.(((((........)))))..))).)))))....((((..................))))..))))... (-12.49 = -13.29 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:03 2011