Locus 4683

Sequence ID dm3.chr2R
Location 15,017,431 – 15,017,488
Length 57
Max. P 0.878078
window6431

overview

Window 1

Location 15,017,431 – 15,017,488
Length 57
Sequences 6
Columns 58
Reading direction reverse
Mean pairwise identity 70.01
Shannon entropy 0.58197
G+C content 0.50266
Mean single sequence MFE -16.18
Consensus MFE -9.83
Energy contribution -8.42
Covariance contribution -1.41
Combinations/Pair 1.92
Mean z-score -0.94
Structure conservation index 0.61
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.03
SVM RNA-class probability 0.878078
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 15017431 57 - 21146708
UUGAGUUCCCAUCUCCACUGAAGUUCACUUCCGGUAUCCG-AAUGACGGAGAAACCGG
..(((.......)))....((((....))))((((.((((-.....))))...)))). ( -13.50, z-score =  -0.36, R)
>droGri2.scaffold_15112 354498 56 + 5172618
UUGGAUCACUGUAUGUGUUGAGGUCCACCUUUUACAUCCGUUAGUGUUGGUGUUGA--
......(((((.(((((..((((....)))).)))))....)))))..........-- ( -10.80, z-score =   0.14, R)
>droSim1.chr2R 13721642 58 - 19596830
UUGAGUUCCGUUCUCCACUGGAGUUCACUUCCGGUAUUGGGAAUGACGGAGAUUCCGG
..((((((((((.((((((((((.....)))))))....)))..)))))).))))... ( -18.50, z-score =  -0.80, R)
>droSec1.super_1 12530483 57 - 14215200
UUGAGUUCCGUUCUUCACUGGAGUUCACUUCCGGUAUCCGUAA-GACGGAGAUUCCGG
.(((..((((........))))..)))...((((..((((...-..))))....)))) ( -18.20, z-score =  -1.53, R)
>droYak2.chr2R 6976381 57 + 21139217
UCGAGUGCCCAUCUCCACCGGAGUUCACUUCCGGUAUGCGAAA-GAUGGAGAAUGCGG
.......((((((((((((((((.....)))))))...(....-)..)))).))).)) ( -20.00, z-score =  -2.01, R)
>droEre2.scaffold_4845 9217098 57 - 22589142
UUGAGUUCCAAUCUUCACCGGAGUUCACUUCCGGUAUCCGAAA-GAUGGAGAAUGCGG
.......(((.((((((((((((.....)))))))...(....-)..))))).)).). ( -16.10, z-score =  -1.11, R)
>consensus
UUGAGUUCCCAUCUCCACUGGAGUUCACUUCCGGUAUCCGAAA_GACGGAGAAUCCGG
...........((((((((((((.....)))))))............)))))...... ( -9.83 =  -8.42 +  -1.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:34:00 2011