| Sequence ID | dm3.chr2R |
|---|---|
| Location | 15,016,695 – 15,016,787 |
| Length | 92 |
| Max. P | 0.542566 |
| Location | 15,016,695 – 15,016,787 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 72.51 |
| Shannon entropy | 0.46723 |
| G+C content | 0.44688 |
| Mean single sequence MFE | -21.55 |
| Consensus MFE | -9.70 |
| Energy contribution | -10.78 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.542566 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 15016695 92 + 21146708 CAAAAACAAACUAUUUGAAACUAUAAACC-GCGAGGCGAAGCGGACGCACCGCGGAUUUGGAUGCGACUAAAAUCACAAACACACUUUUGUCA--------------------- .....(((((.................((-(((..(((.......)))..))))).(((((((.........))).))))......)))))..--------------------- ( -18.90, z-score = -1.76, R) >droSim1.chr2R 13720884 91 + 19596830 CAAAAACAAACUAUUUCAAACUAUAAACC-GCGAGGCGAAGCAGACGCACCGCGGAUUUGGAUGCGACUAAAAUCGCAAACACACUUU-GCCA--------------------- ......((((.................((-(((..(((.......)))..)))))...((..(((((......)))))..))...)))-)...--------------------- ( -22.60, z-score = -3.16, R) >droSec1.super_1 12529726 91 + 14215200 CAAAAACAAUCUUUUUCAAACUAUAAACC-GCGAGGCGAAGCAGACGCACCGCGGAUUUGGAUGCGACUAAAAUCGCAAACACACUUU-GCCA--------------------- ((((.......................((-(((..(((.......)))..)))))...((..(((((......)))))..))...)))-)...--------------------- ( -22.40, z-score = -2.62, R) >droYak2.chr2R 6975644 91 - 21139217 CAACCACAAACUAUUUCAAACUAGAAACC-GCGAGGCGAGGCAGACGCACCGCUGAUUUGGAUGCGACUAAAAUCGCAAACACACUUU-GCCA--------------------- .............((((......))))..-....((((((((((.((...)))))...((..(((((......)))))..))..))))-))).--------------------- ( -19.90, z-score = -1.77, R) >droEre2.scaffold_4845 9216368 91 + 22589142 CAACCACAAACUAUUUCAAACUUUAAGCC-GCGAGGCGAAGCAGACGCACCGCUGAUUUGGAUGCGACUAAAAUCGCAAACACACUUU-GCCA--------------------- .............................-....((((((((((.((...)))))...((..(((((......)))))..))..))))-))).--------------------- ( -19.60, z-score = -1.51, R) >droMoj3.scaffold_6496 12729508 113 - 26866924 CCAGUCCGACUGAUUUAAAAGCAUGGAUUUGAGUUGCGAUGCAUGUGCAU-AUGUAUUGGUGUAUGGGUAAACUAUGUAUAAUACUUGUUGCAUUACACGGCCAUAGCUUACAA .(((.....)))......((((((((...((...((((((((....))..-..((((((...(((((.....)))))..))))))..))))))...))...)))).)))).... ( -25.90, z-score = 0.64, R) >consensus CAAAAACAAACUAUUUCAAACUAUAAACC_GCGAGGCGAAGCAGACGCACCGCGGAUUUGGAUGCGACUAAAAUCGCAAACACACUUU_GCCA_____________________ ..............................(((..(((.......)))..))).....((..(((((......)))))..))................................ ( -9.70 = -10.78 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:59 2011