| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,259,911 – 3,259,974 |
| Length | 63 |
| Max. P | 0.553646 |
| Location | 3,259,911 – 3,259,974 |
|---|---|
| Length | 63 |
| Sequences | 8 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 72.70 |
| Shannon entropy | 0.53590 |
| G+C content | 0.51489 |
| Mean single sequence MFE | -15.49 |
| Consensus MFE | -8.16 |
| Energy contribution | -9.37 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.553646 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3259911 63 + 23011544 AAGCAAAAGUGUGGAACAGACAGACAGGCGUUCUGGACGUUCUGGCACGUGCCUCCACAUAAA ........(((((((......(((...(((((...))))))))(((....))))))))))... ( -16.90, z-score = -0.45, R) >droSim1.chr2L 3196187 63 + 22036055 AAGCAAAAGUGUGGAGCAGACAGACAGGCGUUCUGGACGUUCUGGCACGUGCCUCCACAUAAA ........((((((((((......((((((((...)))).)))).....)).))))))))... ( -19.20, z-score = -0.93, R) >droSec1.super_5 1401963 63 + 5866729 AACCAAAAGUGUGGAGCAGACAGACAGGCGUUCUGGACGUUCUGGCACGUGCCUCCACAUAAA ........((((((((((......((((((((...)))).)))).....)).))))))))... ( -19.20, z-score = -1.03, R) >droYak2.chr2L 3242518 55 + 22324452 ---CAAAAGUGUGGAGCAGACAGACAGGCG-----GACGUUCUGGCACGUGCCUACACAUAAA ---.....((((((.((((.((((..(...-----..)..))))...).)))))))))..... ( -14.90, z-score = -1.03, R) >droEre2.scaffold_4929 3289828 55 + 26641161 ---CAAAAGUGUGGAGCAGACAGACAGGCG-----GACGUCCUGGCACGUGCCUCCACAUAAA ---.....((((((((((......(((((.-----...).)))).....)).))))))))... ( -18.60, z-score = -1.79, R) >droAna3.scaffold_12943 13797 55 + 5039921 ---CGGGAGUGUAGAAUAGACAGACAGGCG-----GACGGUCUGGCACGUGCCUCCACAUAAA ---..((((.(((.......(((((.(...-----..).))))).....)))))))....... ( -14.40, z-score = -0.49, R) >dp4.chr4_group4 1318591 51 + 6586962 ---CGAAAGUGUCGAGUAGAGAGUCAGACA---------GGCAGGCACGUGCCCCGACAUAAA ---.....((((((........(((.....---------))).(((....))).))))))... ( -13.50, z-score = -2.12, R) >droVir3.scaffold_12963 5886378 50 + 20206255 AAACAACAAUGU-GAGGACAAACUUAAAUC---------UUGCAGUAUGUGUCUCC-CAUA-- ........(((.-(((((((.(((......---------....))).))).)))).-))).-- ( -7.20, z-score = -0.26, R) >consensus ___CAAAAGUGUGGAGCAGACAGACAGGCG_____GACGUUCUGGCACGUGCCUCCACAUAAA ........((((((((........((((((.......)).))))........))))))))... ( -8.16 = -9.37 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:26 2011