| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,984,752 – 14,984,823 |
| Length | 71 |
| Max. P | 0.645407 |
| Location | 14,984,752 – 14,984,823 |
|---|---|
| Length | 71 |
| Sequences | 7 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 75.36 |
| Shannon entropy | 0.47901 |
| G+C content | 0.43907 |
| Mean single sequence MFE | -19.00 |
| Consensus MFE | -12.25 |
| Energy contribution | -11.79 |
| Covariance contribution | -0.46 |
| Combinations/Pair | 1.47 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.645407 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14984752 71 - 21146708 GUGGAAAACAUUUUCCUAUUGCCCUUGCCAUUGUC----AUUGGUGGCAAGUGCA-CGAAAAUUAGCUGGCAUUGG ..(((((....)))))...(((((((((((((...----...))))))))).((.-.........)).)))).... ( -20.30, z-score = -1.03, R) >droEre2.scaffold_4845 9182583 71 - 22589142 GUGGAAAACAUUUUCCUAGUGCCAUUGCCAUUGUC----AUUGGUGGCAAGUGCA-CGAAAAUUAGCUGGCAUUGG ..(((((....)))))((((((((((((((((...----...))))))))..((.-.........)))))))))). ( -22.50, z-score = -1.65, R) >droYak2.chr2R 6942211 71 + 21139217 GCGGAAAACAUUUUCCUAGUGCCAUUGCCAUUGUC----AUUGGUGGCAAGUGCA-CGAAAAUUAGCUGGCAUUGG ..(((((....)))))((((((((((((((((...----...))))))))..((.-.........)))))))))). ( -22.80, z-score = -1.65, R) >droSec1.super_1 12490828 71 - 14215200 GUGGAAAACAUUUUCCUAUUGCCCUUGCCAUUGUC----AUUGGUGGCAAGUGCA-CGAAAAUUAGCUGGCAUUGG ..(((((....)))))...(((((((((((((...----...))))))))).((.-.........)).)))).... ( -20.30, z-score = -1.03, R) >droSim1.chr2R 13685892 71 - 19596830 GUGGAAAACAUUUUCCUAUGGCCCUUGCCAUUGUC----AUUGGUGGCAAGUGCA-CGAAAAUUAGCUGGCAUUGG ..(((((....)))))....((((((((((((...----...))))))))).((.-.........)).)))..... ( -19.60, z-score = -0.44, R) >droMoj3.scaffold_6496 20402003 68 + 26866924 --------UACUUUUUUGUUGUUGUUGUUGUUGUCCCCUAUUGUCGUCAACUGCAGCUGAAAUGAGCUGACAUUGA --------......((..((...(((((.((((.(..(....)..).)))).)))))...))..)).......... ( -11.90, z-score = -0.74, R) >droGri2.scaffold_15245 18100780 76 - 18325388 GUGUAAUUCUCUUACUUAUUUUUUAUGCUGCUACUCGGAACUGUCGUCAAGUGCAGCUGAAAUUAGCAGCCAUUGA ..((((.....))))...........(((((((.((((..((((........))))))))...)))))))...... ( -15.60, z-score = -0.42, R) >consensus GUGGAAAACAUUUUCCUAUUGCCCUUGCCAUUGUC____AUUGGUGGCAAGUGCA_CGAAAAUUAGCUGGCAUUGG ...............(((.((((((((((((((........)))))))))).((...........)).)))).))) (-12.25 = -11.79 + -0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:55 2011